si:ch73-111k22.3 (LOC107742221)


Basic Information

Item Value
gene id si:ch73-111k22.3
gene name LOC107742221
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5011381 ~ 5012580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU201127
GGCTTTAGAATCGGCGACCTCTAACGGTACAACAGATGAAAACCAtccagaagaaagagaagaacgGAAAAAAGGATGGTTATTTAAGAAAACACACTACACGAAGCGCTGGAAAATTATGTGGTTTCAGATCAGAGACGGACAGCTTGTCTATGGTTTTAATGAACAGTCTGCAGAAAAGGCTATTAATCTGGTTGGAGCAACGGTGGAGATGCTGGAGGGTGATGCTGGGAGATTCGGCTGGACCCTGACACCAAAGCACAAAAAGCGCACCTACATCCTGCGGGCCAACACCGCAGAAGAGCAGCAGGCGTGGATGAGCGCCATATGTGAAGCACAGCTCACTTCTGAAGAGCACAGCTCCAACGCGTGTGTCCTGCAATAAGattgtccttttttttccaccttAGAGATTGTGTAGGTTTCTAAACTGTATTGTACTATCTTCTCTCACTGCGAAAATGCTCTACTGAAGTATAGCGCACCCCTTGTGAAGGACACGCACTCctataataattctaatacgttcattattattattattattattattattattattattattattattattattattaaacacgtTTATTATAAGACATTGAGTGAACATTGTATAGTTCTACCtgcaaaaagtttttaaagtcAAAGCCaattttttaatgtgctttacagcctg
>XM_043220156.1
aatatttaattattttactatttaattcaagtagcatatttttttttattaattttattcctccaaatattatcacaaaaacaaaagactcTTATTCTGTTTTACGCAGTGCGCGTGAGTAAGTACGTCTCAAAGTAATGGCTTTAGAATCGGCGACCTCTAACGGTACAACAGATGAAAACCAtccagaagaaagagaagaacgGAAAAAAGGATGGTTATTTAAGAAAACACACTACACGAAGCGCTGGAAAATTATGTGGTTTCAGATCAGAGACGGACAGCTTGTCTATGGTTTTAATGAACAGTCTGCAGAAAAGGCTATTAATCTGGTTGGAGCAACGGTGGAGATGCTGGAGGGTGATGCTGGGAGATTCGGCTGGACCCTGACACCAAAGCACAAAAAGCGCACCTACATCCTGCGGGCCAACACCGCAGAAGAGCAGCAGGCGTGGATGAGCGCCATATGTGAAGCACAGCTCACTTCTGAAGAGCACAGCTCCAACGCGTGTGTCCTGCAATAAGattgtccttttttttccaccttAGAGATTGTGTAGGTTTCTAAACTGTATTGTACTATCTTCTCTCACTGCGAAAATGCTCTACTGAAGTATAGCGCACCCCTTGTGAAGGACACGCACTCctataataattctaatacgttcattattattattattattattattattattattattattattattattattattaaacacgtTTATTATAAGACATTGAGTGAACATTGTATAGTTCTACCtgcaaaaagtttttaaagtcAAAGCCaattttttaatgtgctttacagcctgcatgttttaataaaacgcATTGCCAGATTTCGCTGTTCAGTGAGTGGTTGCCTCGGAGGTCCGGTGAACGCTATGTGCCTGTCATCAACTCAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201127 False 682 TUCP 0.40 2 5011476 5012441
XM_043220156.1 True 916 mRNA 0.38 2 5011381 5012580

Neighbor

gene id symbol gene type direction distance location
LOC122324828 cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675 coding downstream 822 4973048 ~ 5010559 (-)
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding downstream 44600 4928862 ~ 4966781 (-)
LOC122324970 cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202 coding downstream 83221 4917807 ~ 4928160 (-)
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding downstream 129754 4849379 ~ 4881627 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding downstream 306073 4695514 ~ 4705308 (-)
ttc13 ttc13,LOC107679664,LOC106571397 coding upstream 21769 5034349 ~ 5052435 (-)
fam89a fam89a,LOC107727345,LOC107742210,LOC107685750,LOC107679680 coding upstream 48127 5060707 ~ 5064427 (-)
sprtn sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995 coding upstream 54035 5066615 ~ 5072155 (-)
c20h1orf131 LOC107727347,LOC107685755 coding upstream 103268 5115848 ~ 5121484 (-)
ints7 ints7,LOC107685756,LOC107659878 coding upstream 363373 5375953 ~ 5385180 (-)
G136069 NA non-coding downstream 274575 4736549 ~ 4736806 (-)
G136012 NA non-coding downstream 565178 4445773 ~ 4446203 (-)
G135975 NA non-coding downstream 575390 4098935 ~ 4435991 (-)
G136175 NA non-coding upstream 5781 5018361 ~ 5018866 (-)
G136176 NA non-coding upstream 21019 5033599 ~ 5033804 (-)
G136180 NA non-coding upstream 78720 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 99593 5112173 ~ 5119766 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 639719 5652299 ~ 5652925 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 429284 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 1036123 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 1141315 3638289 ~ 3870066 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 2253951 2740552 ~ 2757430 (-)
G135548 NA other downstream 2646557 2364053 ~ 2364824 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 12226 5024806 ~ 5029567 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 148626 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 578758 5591338 ~ 5598666 (-)
G136357 NA other upstream 689099 5701679 ~ 5703911 (-)
zpax2 NA other upstream 911486 5924066 ~ 5931122 (-)

Expression


Co-expression Network