LOC122325546 (psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692)


Basic Information

Item Value
gene id LOC122325546
gene name psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7424836 ~ 7429282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU201941
GTTACGTTGATTGCCAGCGACCAGCGGTGGTGAAAATGGGCCAGAGTCAAAGCGGAGGACACGGACCGGGAGGTGGAAAGAAAGATGATAAGgacaagaagaagaaatacGAGCCGCCCATTCCGACCAGAGTTGgcaagaagaagaggaagtCCAAGGGCCCTGATGCTGCCAGCAAACTGCCTTTAGTCACCCCTCACACACAGTGCAGGCTGAAGCTCCTGAAGCAGGAGAGAATCAAAGACTACCTGCTGATGGAGGAAGAGTTCATCAGGAACCAGGAGCAGATGAAACCTCTAGAGGAGAAACAGGAGGAGGAGAGGTCAAAAGTGGATGACCTGAGGGGAACTCCTATGTCTGTGGGCACCCTGGAGGAGATCATCGATGACAACCATGCCATCGTCTCCACATCTGTGGGCTCGGAGCACTATGTCAGCATTCTGTCATTCGTCGACAAAGATCTGCTGGAGCCCGGCTGCTCTGTTTTACTCAACCACAAGGTTCATGCAGTCATAGGGGTTTTGATGGACGACACGGACCCTCTTGTTACCGTCATGAAGGTGGAAAAGGCTCCGCAGGAGACGTACGCTGACATCGGCGGACTGGACGGTCAGATACAAGAAATTAAGGCAAGATACAA
>XM_043220585.1
TCAATCTATCCGTAGTTACGTTGATTGCCAGCGACCAGCGGTGGTGAAAATGGGCCAGAGTCAAAGCGGAGGACACGGACCGGGAGGTGGAAAGAAAGATGATAAGgacaagaagaagaaatacGAGCCGCCCATTCCGACCAGAGTTGgcaagaagaagaggaagtCCAAGGGCCCTGATGCTGCCAGCAAACTGCCTTTAGTCACCCCTCACACACAGTGCAGGCTGAAGCTCCTGAAGCAGGAGAGAATCAAAGACTACCTGCTGATGGAGGAAGAGTTCATCAGGAACCAGGAGCAGATGAAACCTCTAGAGGAGAAACAGGAGGAGGAGAGGTCAAAAGTGGATGACCTGAGGGGAACTCCTATGTCTGTGGGCACCCTGGAGGAGATCATCGATGACAACCATGCCATCGTCTCCACATCTGTGGGCTCGGAGCACTATGTCAGCATTCTGTCATTCGTCGACAAAGATCTGCTGGAGCCCGGCTGCTCTGTTTTACTCAACCACAAGGTTCATGCAGTCATAGGGGTTTTGATGGACGACACGGACCCTCTTGTTACCGTCATGAAGGTGGAAAAGGCTCCGCAGGAGACGTACGCTGACATCGGCGGACTGGACGGTCAGATACAAGAAATTAAGGAGTCCGTGGAGCTGCCGCTGACCCATCCGGAGTATTATGAGGAGATGGGCATCAAGCCTCCCAAAGGGGTCATTCTCTACGGGCCCCCTGGAACAGGTAAAACTCTCCTTGCCAAGGCAGTGGCCAATCAGACATCTGCTACTTTTTTGCGGGTTGTTGGCTCAGAGCTGATTCAGAAGTATCTCGGCGACGGCCCTAAACTAGTCCGTGAGCtcttcagggtggcagaggAGCACGCTCCTTCGATCGTCTTCATCGATGAGATCGACGCCATTGGAACTAAGAGATACGACTCGAACTCGGGAGGTGAACGTGAAATTCAGAGAACCATGCTGGAGCTCCTCAATCAGCTGGATGGCTTTGACTCGCGTGGAGACGTGAAGGTCATTATGGCTACCAACAGAATAGAGACCCTTGACCCTGCTCTTATTAGACCGGGTCGCATCGACCGTAAGATCGAGTTTCCATTACCGGATGAGAAAACCAAGAGAAGGATCTTCCAGATCCACACCAGCAGAATGACAGTGGCTGAGGACGTGATCCTGGATGACCTCATCCTGGCTAAAGACGACCTTTCAGGGGCGGATATTAAGGCCATCTGTACAGAAGCAGGCCTCATGGCCCTCAGAGAACGCAGGATGAAGGTCACCAACGAGGACTTCAAGAAgtctaaagaaaatgttttgtataagaAGCAGGAGGGCACCCCCGAAGGCCTCTATCTCTAACCTTCTCACTTCTCATTTCTGTGTTTATATGCGAGTGCAGCAC

Function

symbol description
psmc1b Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome complex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1).
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4-like

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA

RNA id representative length rna type GC content exon number start site end site
TU201941 False 640 TUCP 0.52 6 7426669 7429268
XM_043220585.1 True 1415 mRNA 0.52 11 7424836 7429282

Neighbor

gene id symbol gene type direction distance location
nfkbiaa NA coding downstream 54641 7368311 ~ 7370195 (-)
LOC122324873 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 coding downstream 99159 7321656 ~ 7325677 (-)
LOC122324872 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933 coding downstream 111514 7308710 ~ 7313322 (-)
LOC122325143 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 167262 7255499 ~ 7257574 (-)
LOC122325548 LOC107742115,LOC107664810 coding downstream 198854 7222636 ~ 7225982 (-)
LOC122325568 NA coding upstream 110843 7540125 ~ 7540240 (-)
LOC122324531 foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483 coding upstream 178850 7608132 ~ 7620574 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding upstream 427740 7857022 ~ 7874571 (-)
faslg LOC107581522,LOC107669138,LOC107712839 coding upstream 551397 7980679 ~ 7983050 (-)
si:dkey-86e18.1 LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794 coding upstream 556609 7985891 ~ 7992309 (-)
G136717 NA non-coding downstream 28544 7360867 ~ 7396292 (-)
G136716 NA non-coding downstream 143032 7281372 ~ 7281804 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding downstream 172964 7152468 ~ 7251872 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding downstream 273082 7151390 ~ 7151754 (-)
LOC122324389 NA non-coding downstream 285545 7133748 ~ 7139291 (-)
G136724 NA non-coding upstream 56611 7485893 ~ 7487411 (-)
G136758 NA non-coding upstream 151743 7581025 ~ 7652975 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding upstream 240298 7669580 ~ 7771831 (-)
G136774 NA non-coding upstream 246661 7675943 ~ 7677043 (-)
G136763 NA non-coding upstream 247834 7677116 ~ 7782233 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other downstream 84381 7335388 ~ 7340455 (-)
G136707 NA other downstream 119112 7296861 ~ 7305724 (-)
G136688 NA other downstream 195873 7125748 ~ 7228963 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other downstream 973337 6432762 ~ 6451499 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other downstream 1010823 6410962 ~ 6414013 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other upstream 2778 7432060 ~ 7436498 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other upstream 115074 7544356 ~ 7601602 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other upstream 264673 7693955 ~ 7696065 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other upstream 356320 7785602 ~ 7799589 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 893831 8323113 ~ 8644759 (-)

Expression


Co-expression Network