LOC122324874 (tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488)


Basic Information

Item Value
gene id LOC122324874
gene name tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7335388 ~ 7340455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU201958
GCGGATCCGCCACTTCCTGTAGCTGCCTCTTCCTGTAGCGCCGCCTCAAACAAAACAAGCGACTTCTCATAAAACCGAGAAGGAGGCCGCCGAGAAGATAATCTACCACCGCGGACGCGTACACTACTCCTCCGTTAATCAAGACGGGGTGTGTTTTCACACAAGCGCGGAGGCTGTGAGCTGGGAGTTACGGCGATGATGGCGTCCAGCTACAGCGCGAAGGAGGAGGACGGTCACCACTCCGGGTCCGTGGGGCTCGGCGGAGCGGCCATCCGGACCAGGAAGCCCGACAACACGGCCTTCAAACAGCAGCGGCTACCGGCCTGGCAGCCCATCCTGACCGCGGGCACCGTGCTGCCCGCCTTCTTCATCATCGGCCTCATCTTCATCCCCATAGGATCGGCCTCTACGTGACGTCCAACAACATCAAGGAGTTCGAGATCGACTACACCGGAACTGACATGTCCAGCCCGTGTTTTAACTGCTCTCAAAGCTTCAGCTGGAACAGCACGAATCCCTGCAAATGTGTGCTGTTCTTCTCTCTAGACCAGCCCTTcgaaAGTAATGTCTTCATGTACTATGGACTCTCAAACTTCTACCAAAACCATCGGCGCTATGTGAAGTCCAGAGATGACAGCCAGCTTAACGGAGACGAGCGCTCACTTAAGGAGCCAAGCAAAGAATGTGAGCCGTACCGCACTAATGATAACAAGCCTATAGCCCCGTGTGGAGCCATTGCTAACAGCATGTTTAATGACACACTGGATCTGTTTTACATTGATCCCAATGGAACGAAAACAGAAATTCCTTTGATCAAAAAAGGGATTGCGTGGTGGACGGATAAGCACGTGAAGTTCAGGAACCCCGGTGGAAGCAACCCAAACCTCACCGCTGTTTTCATAGACACAGCGAAGCCGATCAACTGGCGCAAGCCCGTTTACGAGCTGGACGTTGACCTGGAAAACAACGGCTTCATAAATGAGGATTTCATCGTGTGGATGCGCACAGCCGCTCTCCCCACCTTCAGGAAGCTCTACCGGATCATCCAGAAGAAGAGCAACATGACACCCACCCTTCCCAGAGGAAACTACAGCCTGGAAGTCTCCTACAACTACCCCGTGCGCAGCTTTGAGGGCCGGAAGCGAATGATCCTCAGCACCATCTCCTGGATGGGAGGGAAAAACCCCTTCCTGGGCATCGCCTACATAACCGTGGGCTCCATCTGCTTCTTCCTCGGCGTAGTGCTCCTCTTCATTCATCACAAATACGGAAACCGCAACAACAGCTCCGATATTCCCAA
>TU201961
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacgtaACCCCGTGTTGAACGTGTTTCTCTGCTTCACAGATCGACTACACCGGAACTGACATGTCCAGCCCGTGTTTTAACTGCTCTCAAAGCTTCAGCTGGAACAGCACGAATCCCTGCAAATGTGTGCTGTTCTTCTCTCTAGACCAGCCCTTcgaaAGTAATGTCTTCATGTACTATGGACTCTCAAACTTCTACCAAAACCATCGGCGCTATGTGAAGTCCAGAGATGACAGCCAGCTTAACGGAGACGAGCGCTCACTTAAGGAGCCAAGCAAAGAATGTGAGCCGTACCGCACTAATGATAACAAGCCTATAGCCCCGTGTGGAGCCATTGCTAACAGCATGTTTAATGACACACTGGATCTGTTTTACATTGATCCCAATGGAACGAAAACAGAAATTCCTTTGATCAAAAAAGGGATTGCGTGGTGGACGGATAAGCACGTGAAGTTCAGGAACCCCGGTGGAAGCAACCCAAACCTCACCGCTGTTTTCATAGACACAGCGAAGCCGATCAACTGGCGCAAGCCCGTTTACGAGCTGGACGTTGACCTGGAAAACAACGGCTTCATAAATGAGGATTTCATCGTGTGGATGCGCACAGCCGCTCTCCCCACCTTCAGGAAGCTCTACCGGATCATCCAGAAGAAGAGCAACATGACACCCACCCTTCCCAGAGGAAACTACAGCCTGGAAGTCTCCTACAACTACCCCGTGCGCAGCTTTGAGGGCCGGAAGCGAATGATCCTCAGCACCATCTCCTGGATGGGAGGGAAAAACCCCTTCCTGGGCATCGCCTACATAACCGTGGGCTCCATCTGCTTCTTCCTCGGCGTAGTGCTCCTCTTCATTCATCACAAATACGGAAACCGCAACAACAGCTCCGATATTCCCAA
>XM_043219604.1
ACCGACTCGCTCGTGATTCGCGGATCCGCCACTTCCTGTAGCTGCCTCTTCCTGTAGCGCCGCCTCAAACAAAACAAGCGACTTCTCATAAAACCGAGAAGGAGGCCGCCGAGAAGATAATCTACCACCGCGGACGCGTACACTACTCCTCCGTTAATCAAGACGGGGTGTGTTTTCACACAAGCGCGGAGGCTGTGAGCTGGGAGTTACGGCGATGATGGCGTCCAGCTACAGCGCGAAGGAGGAGGACGGTCACCACTCCGGGTCCGTGGGGCTCGGCGGAGCGGCCATCCGGACCAGGAAGCCCGACAACACGGCCTTCAAACAGCAGCGGCTACCGGCCTGGCAGCCCATCCTGACCGCGGGCACCGTGCTGCCCGCCTTCTTCATCATCGGCCTCATCTTCATCCCCATAGTCGGCCTCTACGTGACGTCCAACAACATCAAGGAGTTCGAGATCGACTACACCGGAACTGACATGTCCAGCCCGTGTTTTAACTGCTCTCAAAGCTTCAGCTGGAACAGCACGAATCCCTGCAAATGTGTGCTGTTCTTCTCTCTAGACCAGCCCTTcgaaAGTAATGTCTTCATGTACTATGGACTCTCAAACTTCTACCAAAACCATCGGCGCTATGTGAAGTCCAGAGATGACAGCCAGCTTAACGGAGACGAGCGCTCACTTAAGGAGCCAAGCAAAGAATGTGAGCCGTACCGCACTAATGATAACAAGCCTATAGCCCCGTGTGGAGCCATTGCTAACAGCATGTTTAATGACACACTGGATCTGTTTTACATTGATCCCAATGGAACGAAAACAGAAATTCCTTTGATCAAAAAAGGGATTGCGTGGTGGACGGATAAGCACGTGAAGTTCAGGAACCCCGGTGGAAGCAACCCAAACCTCACCGCTGTTTTCATAGACACAGCGAAGCCGATCAACTGGCGCAAGCCCGTTTACGAGCTGGACGTTGACCTGGAAAACAACGGCTTCATAAATGAGGATTTCATCGTGTGGATGCGCACAGCCGCTCTCCCCACCTTCAGGAAGCTCTACCGGATCATCCAGAAGAAGAGCAACATGACACCCACCCTTCCCAGAGGAAACTACAGCCTGGAAGTCTCCTACAACTACCCCGTGCGCAGCTTTGAGGGCCGGAAGCGAATGATCCTCAGCACCATCTCCTGGATGGGAGGGAAAAACCCCTTCCTGGGCATCGCCTACATAACCGTGGGCTCCATCTGCTTCTTCCTCGGCGTAGTGCTCCTCTTCATTCATCACAAATACGGAAACCGCAACAACAGCTCCGATATTCCCAATTAAGCTCGCGGAGTGCGTGCCACCTGTCGGCGTTTCAGAGGTGCAGGAGCATTTGACCACTTgatgttttccttttatttattactaccCGAGATGCTGTGTCCACTtacaaagtttctttttttttttttttatttggatgttttctGATGATGGCTGGTGGTTCGTTTCAAGCATGTTTTGGCCGTCGATATGCACGTACGTCTGAGGTTAGCGCGATAGTCAACGAGCAGCCGAAATAAAGACCCAAGTTGTATAAAGTACAgtaaatgaatgtatattttttacctTCGGCCAAAAGTAATGTTTAAACGGGACTGCTTTTAACAGTTTGATGTACAAAGAATAATTTCACTTTCCCTCGAGGTTCTTAAAGGCGAATGCTGTGGCTCTGTTTACTTTCAAATGTCTTCGTAGTGCCAGGTTACGGTAGGGGTCAGTGACAACTACCGTTAAATTTTAAGGACCGTTCAAGTcgtctttttgtgtgtttgtttcctgGAGATGcttgtgcttttttaaagaaGCTTTGCTGTGTGTAATTCATGGCTTGCGAGGACCAAACGTTTCGTTCTTTGTCTATTTAATTGAAACCGTCTTGGGCTCATTTTGGCTGTCGCGTCTTTAAGTGTTTCAGCATGTCTGCCTCTAACAAATAAGCACTTTAGAAAGTGACAagccatacatttttttttttttggccagtttttagaagtgtgtgtgagttttatTGTTGGGTGAATAAAGCGTCTATTGGCTGAA

Function

symbol description
tmem30ab Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Orthologous to human TMEM30A (transmembrane protein 30A).

NR:

description
PREDICTED: cell cycle control protein 50A-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201958 False 1300 TUCP 0.54 7 7336151 7340436
TU201961 False 934 TUCP 0.50 6 7336151 7339939
XM_043219604.1 True 2080 mRNA 0.49 8 7335388 7340455

Neighbor

gene id symbol gene type direction distance location
LOC122324873 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 coding downstream 9711 7321656 ~ 7325677 (-)
LOC122324872 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933 coding downstream 22066 7308710 ~ 7313322 (-)
LOC122325143 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 77814 7255499 ~ 7257574 (-)
LOC122325548 LOC107742115,LOC107664810 coding downstream 109406 7222636 ~ 7225982 (-)
LOC122325011 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 176769 7156267 ~ 7158619 (-)
nfkbiaa NA coding upstream 27856 7368311 ~ 7370195 (-)
LOC122325568 NA coding upstream 199670 7540125 ~ 7540240 (-)
LOC122324531 foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483 coding upstream 267677 7608132 ~ 7620574 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding upstream 516567 7857022 ~ 7874571 (-)
faslg LOC107581522,LOC107669138,LOC107712839 coding upstream 640224 7980679 ~ 7983050 (-)
G136716 NA non-coding downstream 53584 7281372 ~ 7281804 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding downstream 83516 7152468 ~ 7251872 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding downstream 183634 7151390 ~ 7151754 (-)
LOC122324389 NA non-coding downstream 196097 7133748 ~ 7139291 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding downstream 204803 7127213 ~ 7130585 (-)
G136717 NA non-coding upstream 20412 7360867 ~ 7396292 (-)
G136724 NA non-coding upstream 145438 7485893 ~ 7487411 (-)
G136758 NA non-coding upstream 240570 7581025 ~ 7652975 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding upstream 329125 7669580 ~ 7771831 (-)
G136774 NA non-coding upstream 335488 7675943 ~ 7677043 (-)
G136707 NA other downstream 29664 7296861 ~ 7305724 (-)
G136688 NA other downstream 106425 7125748 ~ 7228963 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other downstream 883889 6432762 ~ 6451499 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other downstream 921375 6410962 ~ 6414013 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other downstream 1032412 6274754 ~ 6302976 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other upstream 84381 7424836 ~ 7429282 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other upstream 91605 7432060 ~ 7436498 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other upstream 203901 7544356 ~ 7601602 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other upstream 353500 7693955 ~ 7696065 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other upstream 445147 7785602 ~ 7799589 (-)

Expression


Co-expression Network