LOC122324530 (LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482)


Basic Information

Item Value
gene id LOC122324530
gene name LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7544356 ~ 7601602 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU201981
ATAGGAAAGGGTTCTCTCTGGTCTATTGATCCTGACTACAGACACAATCTGATCCAGGCGCTGAAGAAGACTCCATATCATCCGTATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCGTCTGCCTCTCCTCAGCAATACCACAGTCCTCCACTATGGCCAGGAAGTCCACTCTTCAGAAAGAATGGAGGAGTGCTCTTACAAGTTCCACAGAGAGTGATACAGCACAGCTCACGTGTGGCCGCTCAGGGGCTCTTTCCGGTTATCAGACCCCTTCCTCTGAGTCCCGTGAGCAAGAGGACCACAGCCGTGAGATCCGCCCTGGGCGACTATCTGACCCGGGGTAAGAACAGCCTGCGCAGTGACTCTCCTCCACCCAGCGATGATCAGCAGGAGGACCACACATACAGCAGCTCGCAGTCCCTAAACGCGAAGGGGGACGTTTCTTCCTCCCTCTCCTCCTGCTCCACTCAGGGTTCCCTCTCTGCCTACAGCCCCGGCCAGGAGGTGACGCTCACTGAGGTCAAGGAGGAGCAGAAAGACTTTCCGCTGGACGCCACGCCACCTCCTTCCCAGCTGCTCCAGCGCAGAAGACTGCTGTGGACCAAAGGTCACCTACGGACCCCCGGCGACATGCTTCCCCTGAAGAAGAGACGGGCCGAAAAGCTGCTGGTCAAAGAGGAGGAAGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACCTGGCCGGCGTGCGCACCGGCGTCAATAAAAACGCTCTGCGTACGTGTAAGAAGGAGCCGAAAGAGGAAGCCAATGATTAGCaatgaacgaaaaaaaaaatcccgtTCACACAGATCTAAATACTTCTGTTCCAGGATATCAGGTGAATTCTAGTCAGTCGTTGCAATATCAATAAAATCACTGTTGTCCCTGTCAGATTTGATTTCCAGGGTGAAAGATTCTCATGTTCATGTTgttttgtgtgagagagagtgtgtgtgtgtgtgtgtgtgtgtgNNNGTAAAAATTTGGGTCATTCgagtggaaaaaatgtttttcttttaattcatcAAGCCTACCGAACAATTCAAATGAATTATGTTGTAGCAATCCTTCTAGTTCACATCAGAAAGCTGAATGGagagattttcttttatgctgCTCTCAAGTGTGCCAAAGATATGAAACCCGTTGATGAAAGTGCAGCTAATCCATGCACACTTAGTAAGACCAGGAACAGTTTGAAAGGTAGTGATACCAACctatattacacaaaaaaaaagattaaatctgATGAATATCTGGGTCAATGACATGACTCTCAGTTGTCTTGGTctggctttatttattaatttaaaaacgcAATTTATGCATGCAGCGATTTAATGTATGgagttaaaatgtcattaaaagtaGTATGGCATtccattttattccttttaaaaaataactgcatttaattaatattataataatactttaaagcAAATTAGATTTGGTCTGATAAATCAAAGTAAtgtcaaaacataaataaaaataggatGCTTGCAAACTCTTATGATCGTctttaattcttaaaatatcaGATTGTTTGCCCATTTATGACGTTTTTTCAATTACAAACCCCTAAttagacacttttttttctttttttaatggttaatatatttaaggtgtaaagaaaatatattctttgtGCAATTACCAGTGACACCACGTGACAGAAGTCATTAAAGTGACTCGCATATAACTTTTGTTACATGTCATTgacccatttatttattaagcagcaaatgtTTCGTATAAAATGGCCTGTGTCCAGTGGATACCAGACGTAAAGGTCAAATGCAATATGCCAATTCTCTCTTAAACGCCTggtgtttaaaacatttctggtgTTAGTTCTTATTTGAAGCACACTAAAACTAATCTTTTATGAAGCAATGTCACAAATGCCTATTGTGTTGCCAAACTGttggtgttttttaaaattcctttttttgattttttttttttttttttttttaatNCACTGTAAAAAGtcccttttttttcccacagaaGGCagtttttgcctgttttttcgGTTATATTGCATGGGTGCTTGTACATAAGAAagaagtattttcttttctaaatgaAAGATCATGTAAGATAGATATTTAGCATGAGGCATGGCTTATTTTCTTACAACAAAACAGAGAGAGGCGTCTCTTAAAGCGTAGGtttctttctttactctttattattataaattgtttttttttaaagttgtgtcTCTCTTCTGCGGCAGACAACTCTTCCAAAGGAAGAGACTTCACGGAAACCCATTAATGAACAGATCTGCCTTGTATTGAATATCAGGTGAAACTGATTTTGCCTTTTTCGTGGTCCTCGGTTTGGTGGTCCTTTTTCAATTCATTGATGTAAGTGTTCAAACGTTGTTAATAATCAGTGTTGGATGACCTATCACTCTGTACACCCTTTAAGGTTGTGCCTGCCTTTAGTTcatgtgcttggatgtctgttcttattttttctttctttttttttgtaacggTTCGATACtctgtcatttttcattgtgCGATCTGCAGCATTGATATCACAAATTGTACTGAAATAGTTTGACAAGGAATTAGAATTGGCTTTAGAATAATCCCTTATTAGCGCGAAACTTCTCGGTCGACCTTGGCTTGTCTGTTTCCTTTAGTTTTTGCTTCCAACTCACATAAACTTGAACTTCATCTGTGAATCTGAATGTCCCACGTGTGCAAGGGGGGCCCTGCAGAGAAATAGTTCACcgcaaaaaaaatgtagatgagttcgtTTGTTCATCTGAACAGGTTTAGAGAAATGCGTCACACGCCGATAGagcctctgcagtgaatgggtgccgtcggaatgagagtccaaacaaccgatgaaaacatcacaataatccacatggATCTTTGGCAAAAGCGAATTGAAACATCCCTACAAAGTTTTGAATCTGAAAGTGCGCCATTTATACAGTGTATAcagttgactctgaatcattgagaTGTGTCGTTTTTAAAGTGAATCCCAAGCCGTCAAAAGTGATTTATGAGCATATTACCCGCCCCCACTTGTTGATCTTTTCACGTTGGTCctaattaaaatacatagtCATTATTTGTCACTAGGTTAcgcttttggagcgttaaaagctcacaaacactgctttaaatgtaacCAATGAATCATTGAACGAATCGTTCGgaagtcgttgaacaaataaggtaaaaaaaaaatgcatattgtaaataaatgcataagaaaatgaaagtgcttTTTCCTTGCGTGCATTTCGACCTGTCGTTGGCGActcccaaaactaaaatatgaacttttcataACCCCCAATAGGGGCAGCTTAAGGCGTTTTGGCTTTAAATAACTGTGCATAtgtctctcctgattcagacgagacGACTTTTTCCACCGGTGAAGGCAACATTATGGATAGAGGCTTTTCTGAAAAGAACAGACATGCAGATTTTCACTTTACAAGACCGACTGGGCTCATGTTTTGGATGATTATGTATCAGCTGTTAAGAcgctcgttccgacggcacccattcacttcagaggatccgttagtgagcaagtgacgaaatgctacatttttccaaatctttTCGGATGAAACTCATTTATATCTTGGATAGcctaagggtgagtaaattgtcAGTGAatcgtctttttttttggtgaactgttgctttaatgCTGTCTTGAAAGCTGCTAGCGGACATCTGTCGGCATCGTACATATTATTGTCTACGCAGCATCCATCACGACGTTTACACTCCGCTTCCGCTTCATGTGCGAGTCGCTTTCTGAATGTTTTcttcaaacattttgaaacagttCAGCTCGATTCTTCAGCACTTTTTAATAGGAAGGTTTGTCCTCGGCAGGGGGTGTAGCGATGGAGCGGCCCTGTAAGTGCGAGGACGACGTCAAAGAAGACGGCCCTGCTTTATTTGATCCGCATATAGGCAATAAGCTGCTGCTATGCTGTTTCGCTTTCAATTCATTCCGGGTCCCATAAtatgccattttgttttgtgtaccaAAAACGGCTGATTTTTAATTGCTAAGATTCGTACAGATCCATGTAAGACAAAAGGGGGAGAACAATatgcatgaattatttattggAAAACTCTCACTGCCTCTGAAATTATGTGTGAAATAATATAAGGGTTTTGTcgatgttgttgatgttgtttgTTTCTGCCAAATATTGTTTTCGTCCTTGTACTAAGTCACTAGTGGTCTGGTATGATTTTTTTAGAGCACAATGGAATCACGATGACTATGTATTTGACCAGGTCTATTTTCAATACACTCAGATGCCAATGCTGTACGAGTATAAAGCTGTCTATTTCCTTGGTGTGCAATCATATTGCCAAAGAACAAGATCAAACTATTTCATCAATACATGTAAATAACCACATTGTCTATATGACAATAAATGTCACATCATGTTGTTACTTTTCCACATATTTCTcctgaaactaaaaataatgtttatgtaatgtatTGTCTTCCagttgcaataataaaaatatcaga
>TU201983
CAGTCCTCCACTATGGCCAGGAAGTCCACTCTTCAGAAAGAATGGAGGAGTGCTCTTACAAGTTCCACAGAGAGTGATACAGCACAGCTCACGTGTGGCCGCTCAGGGGCTCTTTCCGGTTATCAGACCCCTTCCTCTGAGTCCCGTGAGCAAGAGGACCACAGCCGTGAGATCCGCCCTGGGCGACTATCTGACCCGGGGTAAGAACAGCCTGCGCAGTGACTCTCCTCCACCCAGCGATGATCAGCAGGAGGACCACACATACAGCAGCTCGCAGTCCCTAAACGCGAAGGGGGACGTTTCTTCCTCCCTCTCCTCCTGCTCCACTCAGGGTTCCCTCTCTGCCTACAGCCCCGGCCAGGAGGTGACGCTCACTGAGGTCAAGGAGGAGCAGAAAGACTTTCCGCTGGACGCCACGCCACCTCCTTCCCAGCTGCTCCAGCGCAGAAGACTGCTGTGGACCAAAGGTCACCTACGGACCCCCGGCGACATGCTTCCCCTGAAGAAGAGACGGGCCGAAAAGCTGCTGGTCAAAGAGGAGGAAGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACCTGGCCGGCGTGCGCACCGGCGTCAATAAAAACGCTCTGCGTACGTGTAAGAAGGAGCCGAAAGAGGAAGCCAATGATTAGCaatgaacgaaaaaaaaaatcccgtTCACACAGATCTAAATACTTCTGTTCCAGGATATCAGGTGAATTCTAGTCAGTCGTTGCAATATCAATAAAATCACTGTTGTCCCTGTCAGATTTGATTTCCAGGGTGAAAGATTCTCATGTTCATGTTgttttgtgtgagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgtctATGTTCTCCTCAGCTCCTCGGCCATGTGTGTACGGCCTCCATCCCTGACGTAGCAGAAACAGAGGAGGGACAGAGTGTGTCCGTCTCGGTCTGTGAGgcgagacagatggagagagagagagagagaccgttGCATTGGAGCTGACGCAGGTGCACGGGAAACATGACACGCCGCGTCTAGAGCACAGAGCCC
>XM_043219037.1
TTATTATCACCTGCCATGGTTGTATCACATCAGtactttgtcttttttgtatttcagagCATAGGAAAGGGTTCTCTCTGGTCTATTGATCCTGACTACAGACACAATCTGATCCAGGCGCTGAAGAAGACTCCATATCATCCGTATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCGTCTGCCTCTCCTCAGCAATACCACAGTCCTCCACTATGGCCAGGAAGTCCACTCTTCAGAAAGAATGGAGGAGTGCTCTTACAAGTTCCACAGAGAGTGATACAGCACAGCTCACGTGTGGCCGCTCAGGGGCTCTTTCCGGTTATCAGACCCCTTCCTCTGAGTCCCGTGAGCAAGAGGACCACAGCCGTGAGATCCGCCCTGGGCGACTATCTGACCCGGGGTAAGAACAGCCTGCGCAGTGACTCTCCTCCACCCAGCGATGATCAGCAGGAGGACCACACATACAGCAGCTCGCAGTCCCTAAACGCGAAGGGGGACGTTTCTTCCTCCCTCTCCTCCTGCTCCACTCAGGGTTCCCTCTCTGCCTACAGCCCCGGCCAGGAGGTGACGCTCACTGAGGTCAAGGAGGAGCAGAAAGACTTTCCGCTGGACGCCACGCCACCTCCTTCCCAGCTGCTCCAGCGCAGAAGACTGCTGTGGACCAAAGGTCACCTACGGACCCCCGGCGACATGCTTCCCCTGAAGAAGAGACGGGCCGAAAAGCTGCTGGTCAAAGAGGAGGAAGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACCTGGCCGGCGTGCGCACCGGCGTCAATAAAAACGCTCTGCGTACGTGTAAGAAGGAGCCGAAAGAGGAAGCCAATGATTAGCaatgaacgaaaaaaaaaatcccgtTCACACAGATCTAAATACTTCTGTTCCAGGATATCAGGTGAATTCTAGTCAGTCGTTGCAATATCAATAAAATCACTGTTGTCCCTG
>XR_006247193.1
TTATTATCACCTGCCATGGTTGTATCACATCAGtactttgtcttttttgtatttcagagCATAGGAAAGGGTTCTCTCTGGTCTATTGATCCTGACTACAGACACAATCTGATCCAGGCGCTGAAGAAGACTCCATATCATCCGTATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCGTCTGCCTCTCCTCAGCAATACCACAGTCCTCCACTATGGCCAGGAAGTCCACTCTTCAGAAAGAATGGAGGAGTGCTCTTACAAGTTCCACAGAGAGTGATACAGCACAGCTCACGTGTGGCCGCTCAGGGGCTCTTTCCGGTTATCAGACCCCTTCCTCTGAGTCCCGTGAGCAAGAGGACCACAGCCGTGAGATCCGCCCTGGGCGACTATCTGACCCGGGGTAAGAACAGCCTGCGCAGTGACTCTCCTCCACCCAGCGATGATCAGCAGGAGGACCACACATACAGCAGCTCGCAGTCCCTAAACGCGAAGGGGGACGTTTCTTCCTCCCTCTCCTCCTGCTCCACTCAGGGTTCCCTCTCTGCCTACAGCCCCGGCCAGGAGGTGACGCTCACTGAGGTCAAGGAGGAGCAGAAAGACTTTCCGCTGGACGCCACGCCACCTCCTTCCCAGCTGCTCCAGCGCAGAAGACTGCTGTGGACCAAAGGTCACCTACGGACCCCCGGCGACATGCTTCCCCTGAAGAAGAGACGGGCCGAAAAGCTGCTGGTCAAAGAGGAGGAAGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACCTGGCCGGCGTGCGCACCGGCGTCAATAAAAACGCTCTGCGTACGTGTAAGAAGGAGCCGAAAGAGGAAGCCAATGATTAGCaatgaacgaaaaaaaaaatcccgtTCACACAGATCTAAATACTTCTGTTCCAGGATATCAGacgagacGACTTTTTCCACCGGTGAAGGCAACATTATGGATAGAGGCTTTTCTGAAAAGAACAGACATGCAGATTTTCACTTTACAAGACCGACTGGGCTCATGTTTTGGATGATTATGTATCAGCTGTTAAGAcgctcgttccgacggcacccattcacttcagaggatccgttagtgagcaagtgacgaaatgctacatttttccaaatctttTCGGATGAAACTCATTTATATCTTGGATAGcctaagggtgagtaaattgtcAGTGAatcgtctttttttttggtgaactgttgctttaatgCTGTCTTGAAAGCTGCTAGCGGACATCTGTCGGCATCGTACATATTATTGTCTACGCAGCATCCATCACGACGTTTACACTCCGCTTCCGCTTCATGTGCGAGTCGCTTTCTGAATGTTTTcttcaaacattttgaaacagttCAGCTCGATTCTTCAGCACTTTTTAATAGGAAGGTTTGTCCTCGGCAGGGGGTGTAGCGATGGAGCGGCCCTGTAAGTGCGAGGACGACGTCAAAGAAGACGGCCCTGCTTTATTTGATCCGCATATAGGCAATAAGCTGCTGCTATGCTGTTTCGCTTTCAATTCATTCCGGGTCCCATAAtatgccattttgttttgtgtaccaAAAACGGCTGATTTTTAATTGCTAAGATTCGTACAGATCCATGTAAGACAAAAGGGGGAGAACAATatgcatgaattatttattggAAAACTCTCACTGCCTCTGAAATTATGTGTGAAATAATATAAGGGTTTTGTcgatgttgttgatgttgtttgTTTCTGCCAAATATTGTTTTCGTCCTTGTACTAAGTCACTAGTGGTCTGGTATGATTTTTTTAGAGCACAATGGAATCACGATGACTATGTATTTGACCAGGTCTATTTTCAATACACTCAGATGCCAATGCTGTACGAGTATAAAGCTGTCTATTTCCTTGGTGTGCAATCATATTGCCAAAGAACAAGATCAAACTATTTCATCAATACATGTAAATAACCACATTGTCTATATGACAATAAATGTCACATCATGTTGTTACTTTTCCACATATTTCTcctgaaactaaaaataatgtttatgtaatgtatTGTCTTCCagttgcaataataaaaatatcagagTTTTAAA

Function

NR:

description
PREDICTED: forkhead box protein N3-like isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU201981 True 4594 lncRNA 0.40 4 7590586 7601542
TU201983 False 1082 lncRNA 0.55 4 7544356 7598714
XM_043219037.1 False 979 mRNA 0.54 4 7594261 7601602
XR_006247193.1 False 2095 transcript 0.46 5 7590578 7601602

Neighbor

gene id symbol gene type direction distance location
LOC122325568 NA coding downstream 4116 7540125 ~ 7540240 (-)
nfkbiaa NA coding downstream 174161 7368311 ~ 7370195 (-)
LOC122324873 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 coding downstream 218679 7321656 ~ 7325677 (-)
LOC122324872 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933 coding downstream 231034 7308710 ~ 7313322 (-)
LOC122325143 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 286782 7255499 ~ 7257574 (-)
LOC122324531 foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483 coding upstream 6530 7608132 ~ 7620574 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding upstream 255420 7857022 ~ 7874571 (-)
faslg LOC107581522,LOC107669138,LOC107712839 coding upstream 379077 7980679 ~ 7983050 (-)
si:dkey-86e18.1 LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794 coding upstream 384289 7985891 ~ 7992309 (-)
LOC122324580 si:dkey-86e18.2,LOC107658157,LOC107739861,LOC107597817 coding upstream 390995 7992597 ~ 7996438 (-)
G136724 NA non-coding downstream 56945 7485893 ~ 7487411 (-)
G136717 NA non-coding downstream 148064 7360867 ~ 7396292 (-)
G136716 NA non-coding downstream 262552 7281372 ~ 7281804 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding downstream 292484 7152468 ~ 7251872 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding downstream 392602 7151390 ~ 7151754 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding upstream 67978 7669580 ~ 7771831 (-)
G136774 NA non-coding upstream 74341 7675943 ~ 7677043 (-)
G136763 NA non-coding upstream 75514 7677116 ~ 7782233 (-)
G136792 NA non-coding upstream 288656 7890258 ~ 7893325 (-)
G136804 NA non-coding upstream 310546 7912148 ~ 7912564 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 107858 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 115074 7424836 ~ 7429282 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other downstream 203901 7335388 ~ 7340455 (-)
G136707 NA other downstream 238632 7296861 ~ 7305724 (-)
G136688 NA other downstream 315393 7125748 ~ 7228963 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other upstream 92353 7693955 ~ 7696065 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other upstream 184000 7785602 ~ 7799589 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 721511 8323113 ~ 8644759 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other upstream 990090 8591692 ~ 8600955 (-)
G137054 LOC107660256,LOC107566921 other upstream 1217252 8818854 ~ 8819327 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G270298 NA non-coding NW_019172086.1 APWO02001684.1 181445 ~ 187648 (-)