pigc (pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814)


Basic Information

Item Value
gene id pigc
gene name pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8323113 ~ 8644759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU202291
aaagtgttttatttataaattcacaGTTTCTAATGGCACTACACTGCTGTAGTtacaactgaaaaaacaaaaaaatcaaatactgtGCAGTTCGTCCTCACAGATTACGAGATTTCATTTGGGCGCCACCTAGCGGACGTTTAAATAAATCAGGCATCCGCCACTAGAGGGCGCCGTACTAAGGAAAGCCTGGGGCGAAAAAGCACTTGTACAAGGTGTGGTGTAGAAAAAACAAAGGCATGTGGAGTTCTCCAAAAAGTGCACAGGAGAGACACGCAGCAGTCTCTGGTGTACTGGAAAGAGTCATCAACATACACACTGATGAGAAAACATCCACTAACTCCACAAGCGTATATCAGTCACcattcaaaaaggaaaaaagtagtGAAACATGTATCATGGAAACCACAGAGACGGTCCGTTGCACACCATCCTGatctttcccttttttttttttttttttttttttttttttgttttttttttttttttttttttttttttttt
>TU202293
aaagtgttttatttataaattcacaGTTTCTAATGGCACTACACTGCTGTAGTtacaactgaaaaaacaaaaaaatcaaatactgtGCAGTTCGTCCTCACAGATTACGAGATTTCATTTGGGCGCCACCTAGCGGACGTTTAAATAAATCAGGCATCCGCCACTAGAGGGCGCCGTACTAAGGAAAGCCTGGGGCGAAAAAGCACTTGTACAAGGTGTGGTGTAGAAAAAACAAAGGCATGTGGAGTTCTCCAAAAAGTGCACAGGAGAGACACGCAGCAGTCTCTGGTGTACTGGAAAGAGTCATCAACATACACACTGATGAGAAAACATCCACTAACTCCACAAGCGTATATCAGTCACcattcaaaaaggaaaaaagtagtGAAACATGTATCATGGAAACCACAGAGACGGTCCGTTGCACACCATCCTGatctttccctttttttttttttttttttttttttttaaattagtGATGCGAATTCACATTCTCTAACCCCCCCACCCCCACCACCAGTCTCATTAAAGGTCAATGACGCGATCGCCCGCATGAAAGAAAACACTTACAAtcttacaaaacacacagagaaactcCACTGGGATGTCGAATGGTCTCTTGGgtgcattaaaaacaactaaGAAAGcagcgaacacacacacgcacgcacacggaAAGTGTGTTAAGAGGGACATGGAGTGTGTGAAGAAAAGatgctggacacacacacacacgcacacaatctTTTACAGGTACATGACAGGTGAGGACAGACCAGACGGTTGCTTTGCTGGACTCATGCATAATATTTGCACAACAACGAGAGCTCGGCCGCTTTTACACTTCACCTCCAATCCAGTAACCCAAAGCTCGTCCGAACAGATCCAGCGAGGAAGAGCGAAGCCAGAAGCTGTACATGTCTACGATCGCGTTAAGAGCATCGCAACAGGTTTATCTGATGTGTcgcttgatttaaaaaaaagaaagaaggcaaaAGTGGAATCCAGCTTTCCCAAATCAACAGAACAGGAAGTTGATGTCCGTACCACTTGTGTGTATCTGTAATATGGAGGTCGGAGGGGCCGCTGTATTTCGTATATCACATGACCGTGATCTCATAGAGCCCGggtcacatttaaataaataaatacataaataattaccACTAGAATAACAGAATGTCCCCCACAAACTCCCCGTGTACATATAAAGCgtgaaaaatgtgtcttttttttactaCGGCTCCATTGAACATGAAGATGATGAGCTGTAAACATACTTGAGATGCTGTTGGGTGCGTtgataaatgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaggcccAGCCTGGACTCAATGGTCAAACTAGATTGCGATCTGAAtagcagagaaagaaaagttTAATTCAGCATAGACTGGATCTGTTCTTCATTCAGCTCTGTTCACTGGACTGAAGTCCTGTGCTATGTGACATCACTGGTCCCACAAACCAATCACAGACACCGACTGGtgtgcagtcacacacacacacgtacaacAATTAATATCCAACGAGGAAGTGAACGAAAAGAGCGAGTGAGAGCATTAAAAAAGACGGAGACCTGAGGGTCATGTTAGCGTAAAGGAACACGATGAATGCTGTGGGTCTTTCATCTGGAATCGGCCTAAACCTCTGGTCACGGCGCTCTACGACATCAAGCCAAGCCTCGTTCATACTTGACAATGTTCATCAAGTCAGAGCTTCCCcagaagtataaaaaaaaaacttaaagggAATAACGAAACGATCCTGAATGGGTAACAAAAAAAAGGCACGTAACCAAAGTTCAGAGAACCAGGATGTAGTGAAGATGGCGTCAGGATCAGCGCTCGCAATAAAA
>TU202294
CCGGGTGTGAGATGGCGTGACAGCGGTGGGAAGACGGAGACATACGTGCTGTTTCGgTGGGCATTCGTGTCTCAGTGTGGCTGTTGAGCGGGCACCGCCGGTGGCTGTCTCCTGCAACACATTACACATAACCTGAGCTGTCAGAACAGACTGCCATAGGTCACCGCTCACAGCTCTGCCAATTCAGCTAATGGAAATAACAACAATCTCCCATAAACTGCTCTGCTTCAGATGTCTGCATGTGTTTACAATTGCCCCGCGAGTGGCTTTTGTTTTGGGAAAATGAAAGCGAAATGAACACGGATGGCCAGATCGGATCAACGGGACTGAGAGGAAcgcaaaaatgacttttctttaGATGGGCTGCAAATAAATACCAAACCCTGCGAGTCATCCATAAAAatctgaacaacaacaaaaagagccCCAGTAATTATgaatatacacatgcattaaGTTGCTAAAAAGTGAcaggaaatacatttataatgtccaGTGTCTGATTCAGATAAATACTGTTGAATCTAAAAATAGGCATCAACCAGAAATACATTAaacagcacaattgttttcgacgcataataatagtaaacgtttgttgagcagcaaatcaacatattagaatggtttctgaagaatcatgggACACTAAAGCCTAAAgcaaatgatgctgaaaattcagctgtgcatCACAGGATTAAAtgacgttttaaaatatattaaaa
>TU202295
CCGGGTGTGAGATGGCGTGACAGCGGTGGGAAGACGGAGACATACGTGCTGTTTCGgTGGGCATTCGTGTCTCAGTGTGGCTGTTGAGCGGGCACCGCCGGTGGCTGTCTCCTGCAACACATTACACATAACCTGAGCTGTCAGAACAGACTGCCATAGGTCACCGCTCACAGCTCTGCCAATTCAGCTAATGGAAATAACAACAATCTCCCATAAACTGCTCTGCTTCAGATGTCTGCATGTGTTTACAATTGCCCCGCGAGTGGCTTTTGTTTTGGGAAAATGAAAGCGAAATGAACACGGATGGCCAGATCGGATCAACGGGACTGAGAGGAAcgcaaaaatgacttttctttaGATGGGCTGCAAATAAATACCAAACCCTGCGAGTCATCCATAAAAatctgaacaacaacaaaaagagccCCAGTAATTATgaatatacacatgcattaaGTTGCTAAAAAGTGAcaggaaatacatttataatgtccaGTGTCTGATTCAGATAAATACTGTTGAATCTAAAAATAGGCATCAACCAGAAATACATTAaacagcacaattgttttcgacgcataataatagtaaacgtttgttgagcagcaaatcaacatattagaatggtttctgaagaatcatgggACACTAAAGCCTAAAgcaaatgatgctgaaaattcagctgtgcatCACAGGATTAAAtgacgttttaaaatatattaaaatagagaccagatattttaaactttaataatatttcccaaATATTGCTGTTCATACagtatttgtaattaaataactGCAGCCTAGGCGGGCataagaaatttttttttaaatcttactgaccccagatgttttaaatgtggT
>TU202296
aaagtgttttatttataaattcacaGTTTCTAATGGCACTACACTGCTGTAGTtacaactgaaaaaacaaaaaaatcaaatactgtGCAGTTCGTCCTCACAGATTACGAGATTTCATTTGGGCGCCACCTAGCGGACGTTTAAATAAATCAGGCATCCGCCACTAGAGGGCGCCGTACTAAGGAAAGCCTGGGGCGAAAAAGCACTTGTACAAGGTGTGGTGTAGAAAAAACAAAGGCATGTGGAGTTCTCCAAAAAGTGCACAGGAGAGACACGCAGCAGTCTCTGGTGTACTGGAAAGAGTCATCAACATACACACTGATGAGAAAACATCCACTAACTCCACAAGCGTATATCAGTCACcattcaaaaaggaaaaaagtagtGAAACATGTATCATGGAAACCACAGAGACGGTCCGTTGCACACCATCCTGatctttcccttttttttttttttttttttgaaattagtGATGCGAATTCACATTCTCTAACCCCCCCACCCCCACCACCAGTCTCATTAAAGGTCAATGACGCGATCGCCCGCATGAAAGAAAACACTTACAAtcttacaaaacacacagagaaactcCACTGGGATGTCGAATGGTCTCTTGGgtgcattaaaaacaactaaGAAAGcagcgaacacacacacgcacgcacacggaAAGTGTGTTAAGAGGGACATGGAGTGTGTGAAGAAAAGatgctggacacacacacacacgcacacaatctTTTACAGGTACATGACAGGTGAGGACAGACCAGACGGTTGCTTTGCTGGACTCATGCATAATATTTGCACAACAACGAGAGCTCGGCCGCTTTTACACTTCACCTCCAATCCAGTAACCCAAAGCTCGTCCGAACAGATCCAGCGAGGAAGAGCGAAGCCAGAAGCTGTACATGTCTACGATCGCGTTAAGAGCATCGCAACAGGTTTATCTGATGTGTcgcttgatttaaaaaaaagaaagaaggcaaaAGTGGAATCCAGCTTTCCCAAATCAACAGAACAGGAAGTTGATGTCCGTACCACTTGTGTGTATCTGTAATATGGAGGTCGGAGGGGCCGCTGTATTTCGTATATCACATGACCGTGATCTCATAGAGCCCGggtcacatttaaataaataaatacataaataattaccACTAGAATAACAGAATGTCCCCCACAAACTCCCCGTGTACATATAAAGCgtgaaaaatgtgtcttttttttactaCGGCTCCATTGAACATGAAGATGATGAGCTGTAAACATACTTGAGATGCTGTTGGGTGCGTtgataaatgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCAGTCCCAGGTATTTCTGCAGCTTTAATCGTTGTTCCTGTAGAGCAGCATAGCAGCAGGACATTTCTGCCAGTGTTGAATTGATAGAATATAATAAGCCTTTGTTGGCTTTTCTGTGGTATCATTTATAACTGACAGAATAACAACTCGTACAAACAGTCTGTGTGACACCGCAATAAAGTTGCCAAATTAAAGCATTCTGTGCAAAAAGAGCGTCTtgtaaattgtatataaatatataaatgaagttGTGTTTGGCAAAATAAGATcaagaataatgttttttttccacattttctgAAAACGAGAGTGCTGCTGGAAATTCTCACTGCGTCGCTAGGTTACTGT
>TU202297
aaagtgttttatttataaattcacaGTTTCTAATGGCACTACACTGCTGTAGTtacaactgaaaaaacaaaaaaatcaaatactgtGCAGTTCGTCCTCACAGATTACGAGATTTCATTTGGGCGCCACCTAGCGGACGTTTAAATAAATCAGGCATCCGCCACTAGAGGGCGCCGTACTAAGGAAAGCCTGGGGCGAAAAAGCACTTGTACAAGGTGTGGTGTAGAAAAAACAAAGGCATGTGGAGTTCTCCAAAAAGTGCACAGGAGAGACACGCAGCAGTCTCTGGTGTACTGGAAAGAGTCATCAACATACACACTGATGAGAAAACATCCACTAACTCCACAAGCGTATATCAGTCACcattcaaaaaggaaaaaagtagtGAAACATGTATCATGGAAACCACAGAGACGGTCCGTTGCACACCATCCTGatctttcccttttttttttttttttttttttgaaattagtGATGCGAATTCACATTCTCTAACCCCCCCACCCCCACCACCAGTCTCATTAAAGGTCAATGACGCGATCGCCCGCATGAAAGAAAACACTTACAAtcttacaaaacacacagagaaactcCACTGGGATGTCGAATGGTCTCTTGGgtgcattaaaaacaactaaGAAAGcagcgaacacacacacgcacgcacacggaAAGTGTGTTAAGAGGGACATGGAGTGTGTGAAGAAAAGatgctggacacacacacacacgcacacaatctTTTACAGGTACATGACAGGTGAGGACAGACCAGACGGTTGCTTTGCTGGACTCATGCATAATATTTGCACAACAACGAGAGCTCGGCCGCTTTTACACTTCACCTCCAATCCAGTAACCCAAAGCTCGTCCGAACAGATCCAGCGAGGAAGAGCGAAGCCAGAAGCTGTACATGTCTACGATCGCGTTAAGAGCATCGCAACAGGTTTATCTGATGTGTcgcttgatttaaaaaaaagaaagaaggcaaaAGTGGAATCCAGCTTTCCCAAATCAACAGAACAGGAAGTTGATGTCCGTACCACTTGTGTGTATCTGTAATATGGAGGTCGGAGGGGCCGCTGTATTTCGTATATCACATGACCGTGATCTCATAGAGCCCGggtcacatttaaataaataaatacataaataattaccACTAGAATAACAGAATGTCCCCCACAAACTCCCCGTGTACATATAAAGCgtgaaaaatgtgtcttttttttactaCGGCTCCATTGAACATGAAGATGATGAGCTGTAAACATACTTGAGATGCTGTTGGGTGCGTtgataaatgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCAAGGAAAAAACGCGTGTTTTACTTCACTGAGTGTCGGAGGGGGTGTGGTAGACTTCTGTCAGAGCGAATTATGGGGAACCCTGACAGAACTGTGACATCACTCAACATGTTGCTCCAAAGCATAcataaagacagaaagaaggaggaggaggggtgcatgaggaaaaaaaggcAAGGGAGCTGATTAGAAACAGAGCTCAAAGCCCCCTCCTTCGCTGATCCTTCATGGTGTGACACAAGAGCTGAGGAATGCAGCAGAGCTTCT
>XM_043220259.1
ATGGGGGCAGACAGTGGTCCGGGAGCTCCTGCAGCCGTCCCGTGGCGTAAAGTCCTATACGAACGCCAGCCTTTCCCGGACAATTATGTGGACCGCCGCTTTCTGGAGGAGCTGCGGCGCAACATCCGAGTGCATCAGTACCGCTACTGGGCGGTGGTGCGCGAGACGGGGCTCATTGCTCAGCAGGTGTCCTGCGTAGCCGTCTTCCTCACGTTATGGTCTTACATGGAGCAGGGAGACCTGGTGCCGTCCGCGGTGCTCTGGGTCTGTTTAGGCTGCGCTCTGCTGGGCTACGGACTCTACGAGTTCCTAGGAGGCTCTCGTGTTCGGGAGCGAACGCACCTGGCCGACCTGCAGAGCGCCGCCATCTTCCTGGCGTTTACCTTCGGGTTTTCACCGGTGTTGAAGACTCTGACCGAGTCGGTTAGCACAGACACCGTTTACGCCATGTCAGCCGTCATGCTCTTGGCTCACTTGGTGTCCTTCCCGTATGCTCGGCCCAGTCCGCCGGGCAGTCTTTCGCTCAACGCGGCTCTTTTCGGCTCGGTGTGTCTGGCGTCCCGGCTGCCTGGCGCCCTGCATACCTTCACCATGCTGAACTGCGCCCTCCTGGTGTTCGCTCTGTGGCCCTGTCTGCTGCAGCGCGTGCGGGAGAAGGCCGAGTGGAGCTTCCCGTGGGCCGCGGCGCTGGTGTGTCTGGCTGGAGTCGGGGGTCTGGGGCGCCTGTGGCCCGAGGGCGCTCTTCTGCTCTCGCTGGCTCTGTTAACACTAACTTTAGTCTGTCCACTGTTGCTGGTCCTCCTGCAGAGGCACAAGGACAACATCCACGGCCCTTGGGACGAGGCAGAGATTAGAGAGGACCTGTCCCGCTTCTTGAATTGAAAATGCAGGTTTTAAAGAGCATGCTTTTGATAAGATTCCCTTTGGAgggatgattttgtttttttttttttaagagaaagtttacctaaaaataaatCGTCTGTCATCGGTTACAAGGTTTGTGATTACAAACCTTGtacagttagattttttttcttgtggaacatgaaatacatttttttgaggATATGCTGGTAACagttttgtttgcctttgacttCTGTTGTAGAAAcactttcttttgtgttccagaggttaaaatgacagattttttagTTTTGGGTAAGCTGTGCCTTTAACCTCAGGGAAAAATAAGAACGGCTGCTgggaaatgtgttttcattttaccagtatgaaattaaattattgttagtgtcaaaaaacatgtataggtcacatttattaaaaaggtaAATTTCATTTACTTCAAAAAATGAACCACtaaacatataattttttagaCAAATAATATGATGTTGGCTTTGGTTTATAATCactgttttgtgattttaaaacgaTGGAAGTAGGGAATggtttttaacagtatttatatattaacgtGCATATTCTGGTTCTTGATTAAACGTTTAATCATTAATTGCTCATATTTTAACATGCTCACTATGttggaaataaatgtttctaatatataacatatatatagtttctaataacttatgtatgtatgtatgcatgtatgcatgtatatggaGGTGATAGGAAATTTGGACAAGCTGTTGCCCACAAGAGGTCAGTCAGTCCCAGGTATTTCTGCAGCTTTAATCGTTGTTCCTGTAGAGCAGCATAGCAGCAGGACATTTCTGCCAGTGTTGAATTGATAGAATATAATAAGCCTTTGTTGGCTTTTCTGTGGTATCATTTATAACTGACAGAATAACAACTCGTACAAACAGTCTGTGTGACACCGCAATAAAGTTGCCAAATTAAAGCATTCTGTGCAAAAA

Function

symbol description
pigc Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human PIGC (phosphatidylinositol glycan anchor biosynthesis class C).

NR:

description
phosphatidylinositol N-acetylglucosaminyltransferase subunit C

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202291 False 507 lncRNA 0.38 2 8579698 8644759
TU202293 True 2006 TUCP 0.44 2 8381494 8644759
TU202294 False 725 lncRNA 0.42 2 8330615 8334855
TU202295 False 867 lncRNA 0.40 2 8330473 8334855
TU202296 False 1734 TUCP 0.42 3 8331767 8644759
TU202297 False 1654 TUCP 0.44 3 8323113 8644759
XM_043220259.1 False 1847 mRNA 0.46 1 8331905 8333751

Neighbor

gene id symbol gene type direction distance location
itpa itpa,LOC107712840 coding downstream 35868 8284042 ~ 8287245 (-)
vamp4 vamp4,LOC107712870,LOC107733808 coding downstream 51890 8261758 ~ 8271223 (-)
myoc myoc,LOC107669152,LOC107581474,LOC107712866,LOC107697243,LOC107733809 coding downstream 65122 8251452 ~ 8257991 (-)
prdx6 prdx6,LOC107712864,LOC107597803 coding downstream 188082 8130352 ~ 8135031 (-)
jun jun,LOC107712863,LOC107581481,LOC107739852 coding downstream 322582 7998591 ~ 8000531 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 433986 9078745 ~ 9095364 (-)
bsnd LOC107697389,LOC107716551,LOC107566144,LOC107687198,LOC107712846,LOC107581515 coding upstream 691172 9335931 ~ 9339220 (-)
si:dkeyp-51f12.3 NA coding upstream 694604 9339363 ~ 9355284 (-)
si:dkeyp-51f12.2 si:dkeyp-51f12.2 coding upstream 712649 9357408 ~ 9359541 (-)
ftr85 LOC107697417,LOC107716559,LOC107566153,LOC107712832,LOC107581513,LOC107580448 coding upstream 732290 9377049 ~ 9381993 (-)
LOC122325283 NA non-coding downstream 9146 8311491 ~ 8313967 (-)
G136935 NA non-coding downstream 61821 8261083 ~ 8261292 (-)
G136909 NA non-coding downstream 115169 8202900 ~ 8207944 (-)
LOC122325257 NA non-coding downstream 140454 8153665 ~ 8182659 (-)
G136804 NA non-coding downstream 410549 7912148 ~ 7912564 (-)
G137053 NA non-coding upstream 105788 8750547 ~ 8750798 (-)
G137057 NA non-coding upstream 177032 8821791 ~ 8822181 (-)
G137102 NA non-coding upstream 474176 9118935 ~ 9124743 (-)
LOC122324791 NA non-coding upstream 577520 9222279 ~ 9240697 (-)
G137132 NA non-coding upstream 607953 9252712 ~ 9252970 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other downstream 523524 7785602 ~ 7799589 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other downstream 627048 7693955 ~ 7696065 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 721511 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 886615 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 893831 7424836 ~ 7429282 (-)
G137054 LOC107660256,LOC107566921 other upstream 174095 8818854 ~ 8819327 (-)
G137056 NA other upstream 176395 8821154 ~ 8821719 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other upstream 610789 9255548 ~ 9283383 (-)
pcsk9 pcsk9,LOC107687184,LOC107566146,LOC107697372,LOC107716550,LOC107578795 other upstream 680894 9325653 ~ 9335061 (-)
si:ch73-74h11.1 LOC107687168,LOC107588915 other upstream 1046365 9691124 ~ 9700538 (-)

Expression


Co-expression Network