LOC122324857 (mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304)


Basic Information

Item Value
gene id LOC122324857
gene name mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8591692 ~ 8600955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU202349
GGCAGACGAGGTGGATGTTGTTGACATCGAGGGAGATGAATGTGACGAAAGAGTCGGGGACCTGAACAGTGCTGAGATTCTCCAGGATCAGTATTTACAGTCTGCTTGGAAGACGAACAGCAGTATACTGCCGTGGACGCTGGACAGCTCCATCAGTGATGAGAACAGACAGGCCATTGAGAGCATGCTGCTGGAGGAACAgTATTATTTTGCCGGTAAAAAGCACCAAAGGTGGCGTGGACCAATGAGAAGACTAAAGTCAGAAAGACGTTGGTGAAGAGTGCTGGAGCACAAACTCGTTGGGTTGAAGAGGAGAAAGATCTCTTTGAGAAAGGACTGGCTCAGTTTGGCCGCAGGTGGACAAAAATCGCCAAACTAATCGGTACTAGGACAGTTCTACAGGTGAAGAGCTATGCTAGGCAGTACTTCAAAAATAAGTCTAAAACAGACGCACCTGCCAAAGCCCCTCCTCTAATGAGACCTCAGACACCGCGCTGCTCCCCTCGTCCCAGCCTCATGTGTCGGCCCTGA
>XM_043219562.1
ATGGCAGACGAGGTGGATGTTGTTGACATCGAGGGAGATGAATGTGACGAAAGAGTCGGGGACCTGAACAGTGCTGAGATTCTCCAGGATCAGTATTTACAGTCTGCTTGGAAGACGAACAGCAGTATACTGCCGTGGACGCTGGACAGCTCCATCAGTGATGAGAACAGACAGGCCATTGAGAGCATGCTGCTGGAGGAACAACGCACCTGCCAAAGCCCCTCCTCTAATGAGACCTCAGACACCGCGCTGCTCCCCTCGTCCCAGCCTCATGTGTCGGCCCTGACCAACGCTGTGCGCATCGAGCAGCTTTCTGACGATGAAGATGTTGACATTACCGATGGCGTTAGCGGCAGCGGCCTTCAGTCAGAAAACCAGCTAGAGTCCCCAGAGTGCAACCACAAAGAAGAACTCAGTCCACCGCCACCTCCATCAGGCGTAAGACTGAATCAGGTGAAAGTCCTGAGGGACGAGGAGGAGGAATAccaggaggaagaagaagaggaggaggaggaggaggagctcaGAGCACCTGACCAGGAGGTTCTTCTGGACCTAAACACCATTACAGAGGAGGAGAAGCAAGCCATCCCAGAATTCTTTGAGGGGCGTCCGGAAAGTAAACCAAAGTACCTGAACAAGACATCAGTGCGCCCAGGACTGAAGAATTGTGGGGATGTCAACTGCATCGGTCGGATACACACCTACCTGGAGCTCATTGGAGCTATTAACTTCAACTGTGATCAGGCGATCTATAACCGTCCACGGCTGGTTGATCGCTCTCGGCTGAAGGAAAACAAAGACAGCCTGGAGGCGTATCATCTTGCCCAGAGACTTCAATCTATGcgcACAAGGAAGCGGCGCATTCGGGACATGTGGGGGAACTGGTGCGATGCTAAAGATCTAGAGGGTCAGACGTATGAGGAGCCGTACAAAGTGATAGTTTGTGCTGAGGCTCTTGTTGTCATGGATATACATGCTCATGTATCGATGGGAGAGGTGATTGGCCTTTTAGGAGGAACAtatgaagaggaagagaaggtGTTAAAGATCTGTGCAGCAGAGCCATGTAACAGCTTGAGCACAGGTCTGCAGTGTGAGATGGACCCCGTCTCTCAGACCCAGGCATCAGAGCTGCtcggggtcaaaggtcacagtGTGGTGGGATGGTACCACTCTCATCCAGCCTTCGACCCCAACCCCTCCCTCAGAGACATTGACACTCAGGCCAAATACCAGAGTTATTTCTCTCGAGGAGGTGCTCCGTTCATCGGGATGATTGTCAGCCCGTATAACTCCAGTAACCCGTCTCCCCTGTCTCAGACCACCTGCCTGCTGGTCCAGGAGGAGACCGGACCCTCTGGACCTCAGAGGTTTCCGTATCGATTTAACATCCAGCATTCATCCGAGCTCCCTGATTGGTCAGAAGTGATGAGAAGAGCAGAATGGGTGGTGTTCAAGTACAGGCTGTCTCATGGGAGCGTACCAATGGACAGGCTCTTCCGCAGAGACTCTTCTCTGACTTGCCTAGAAAAGGTAATCATCTCATCTCTTCACATCACACCCACTCACGGACCAGTGTATATTGCACGTGAAAATCGCAAAAGATTTCAGGCTAGCTGGATGCTTGCATCAATCCGGAGGACTTTGGAGCAGGTCTCAGAGATAGACATAGAGACTTTCCTGGTACAGATAGAAAGcttgtttaaaacacattttctcccCGAAACTGGCTCTTCCTCCTGTCATCTTCTTGAAACAGTAAGGCAGCCAGAGTTACTGTCTTTCGTCTCCTCCGAGCCAATCAGCAGCAGCCATGCCACGGATGATACGTGCGTTACCGAATCTGACAGCCCTGATGAAGAAGAGGACGCTGCCGTTACACAGTCTGTCGGAGCAGAAActgtgtaa

Function

symbol description
mysm1 Predicted to enable histone binding activity; peptidase activity; and transcription coactivator activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human MYSM1 (Myb like, SWIRM and MPN domains 1).

NR:

description
Si:ch211-59d15.8 protein, partial

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202349 False 531 lncRNA 0.50 7 8597810 8600953
XM_043219562.1 True 1911 mRNA 0.52 15 8591692 8600955

Neighbor

gene id symbol gene type direction distance location
LOC122325066 LOC107687338,LOC107597794,LOC107728091,LOC107712844,LOC107581495 coding downstream 507 8572552 ~ 8591185 (-)
LOC122324856 LOC107733811 coding downstream 183435 8402799 ~ 8408257 (-)
tmed5 tmed5,LOC107733818,LOC107597813,LOC107712842,LOC107581519,LOC108415774 coding downstream 250742 8336607 ~ 8340950 (-)
itpa itpa,LOC107712840 coding downstream 304447 8284042 ~ 8287245 (-)
vamp4 vamp4,LOC107712870,LOC107733808 coding downstream 320469 8261758 ~ 8271223 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 477790 9078745 ~ 9095364 (-)
bsnd LOC107697389,LOC107716551,LOC107566144,LOC107687198,LOC107712846,LOC107581515 coding upstream 734976 9335931 ~ 9339220 (-)
si:dkeyp-51f12.3 NA coding upstream 738408 9339363 ~ 9355284 (-)
si:dkeyp-51f12.2 si:dkeyp-51f12.2 coding upstream 756453 9357408 ~ 9359541 (-)
ftr85 LOC107697417,LOC107716559,LOC107566153,LOC107712832,LOC107581513,LOC107580448 coding upstream 776094 9377049 ~ 9381993 (-)
LOC122325283 NA non-coding downstream 277725 8311491 ~ 8313967 (-)
G136935 NA non-coding downstream 330400 8261083 ~ 8261292 (-)
G136909 NA non-coding downstream 383748 8202900 ~ 8207944 (-)
LOC122325257 NA non-coding downstream 409033 8153665 ~ 8182659 (-)
G136804 NA non-coding downstream 679128 7912148 ~ 7912564 (-)
G137053 NA non-coding upstream 149592 8750547 ~ 8750798 (-)
G137057 NA non-coding upstream 220836 8821791 ~ 8822181 (-)
G137102 NA non-coding upstream 517980 9118935 ~ 9124743 (-)
LOC122324791 NA non-coding upstream 621324 9222279 ~ 9240697 (-)
G137132 NA non-coding upstream 651757 9252712 ~ 9252970 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other downstream 792103 7785602 ~ 7799589 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other downstream 895627 7693955 ~ 7696065 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 990090 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 1155194 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 1162410 7424836 ~ 7429282 (-)
G137054 LOC107660256,LOC107566921 other upstream 217899 8818854 ~ 8819327 (-)
G137056 NA other upstream 220199 8821154 ~ 8821719 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other upstream 654593 9255548 ~ 9283383 (-)
pcsk9 pcsk9,LOC107687184,LOC107566146,LOC107697372,LOC107716550,LOC107578795 other upstream 724698 9325653 ~ 9335061 (-)
si:ch73-74h11.1 LOC107687168,LOC107588915 other upstream 1090169 9691124 ~ 9700538 (-)

Expression


Co-expression Network