si:dkey-5n18.1 (LOC107723560,LOC107687192,LOC107588914)


Basic Information

Item Value
gene id si:dkey-5n18.1
gene name LOC107723560,LOC107687192,LOC107588914
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9697662 ~ 9751383 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU202777
CACTGGACAGCGGTCCTCCTCACACTTCTGTCTGTGACCCGAGCAGGCGTCTGTGAGACCCTGCCTGGCTCCTGCAGGATCGTGTGTGACCCCTCCTCAGGTCTTTCTAAAGACCAAGGCAATGGCTTTGTCATCCCCCTCACCTCATCTGCGGCAGGACCTCCCGGGCCACGTGGTCCTCCGGGTAAAGCAGGGCCCGCGGGGCCAGCCGGACCCTCGGGTATAGGCTCGTCGAGTACGGGAGGTGTGGCGTTCAGCGCTGCGCTGCAGGACGCCATCGCCAAGAACGATGTGATAAAGTTTAACGACGTGATTACTAATCTGGGAGGAGGTTATGACTCCTCCACCGGGACCTTCACCTGTAAAACAGCGGGAGTGTACTACTTCATCTTTAGCATTGTCAAGACCGGCCAGAACCTACGAGTGGACTTGTTTCTTAATGACCAAACGGCTGTGGCGAGTGCGGTGGCAGTGGACGTTCTTCACACAGACACCGCAAGCAACAGCGTAGTGCTGCAGCTGAAAGCTGGGGACCGGCTGTACGTCCGGCTGAACAGCAGCGAACTAAGCAAGAGGGACTCACAGAGCCGCTTCAGTATCTTCTCTGGTTACCTGCTGTATGAGATCTGAGACCAACAGACAAACATGATGTCTTTCAGCTTTAACCTCTTTCTGGTAGTTTGAAGAGGCCTCTTTGAGTTCAGACTGCGCGTTTCCTTGAATAAAGTATGAATTCTCTGGCAATaaaaaaaaaaaaaaaaaaaaa
>TU202778
CACTGGACAGCGGTCCTCCTCACACTTCTGTCTGTGACCCGAGCAGGCGTCTGTGAGACCCTGCCTGGCTCCTGCAGGATCGTGTGTGACCCCTCCTCAGGTCTTTCTAAAGACCAAGGCAATGGCTTTGTCATCCCCCTCACCTCATCTGCGGCAGGACCTCCCGGGCCACGTGGTCCTCCGGGTAAAGCAGGGCCCGCGGGGCCAGCCGGACCCTCGGGTATAGGCTCGTCGAGTACGGGAGGTGTGGCGTTCAGCGCTGCGCTGCAGGACGCCATCGCCAAGAACGATGTGATAAAGTTTAACGACGTGATTACTAATCTGGGAGGAGGTTATGACTCCTCCACCGGGACCTTCACCTGTAAAACAGCGGGAGTGTACTACTTCATCTTTAGCATTGTCAAGACCGGCCAGAACCTACGAGTGGACTTGTTTCTTAATGACCAAACGGCTGTGGCGAGTGCGGTGGCAGTGGACGTTCTTCACACAGACACCGCAAGCAACAGCGTAGTGCTGCAGCTGAAAGCTGGGGACCGGCTGTACGTCCGGCTGAACAGCAGCGAACTAAGCAAGAGGGACTCACAGAGCCGCTTCAGTATCTTCTCTGGTTACCTGCTGTATGAGATCTGAGACCAACAGACAAACATGATGTCTTTCAGCTTTAACCTCTTTCTGGTAGTTTGAAGAGGCCTCTTTGAGTTCAGACTGCGCGTTTCCTTGAATAAAGTATGAATTCTCTGGCAATTTGCCTGACTGAGACTTTTCATTGAATGTTGAATTAATTCCTCCGTTTTCAAAGGCAGAGACCTTGGCGAGATACTTCACGGGGCACTGGCACAGATATTACACTTGGACTTCAGGGACACCGAGAATGACACAACAG
>XM_043218587.1
TTTAAATCCCTTCATGTCTCTGAAGCCGTACTTCAGCATGGCCGAGCACTGGACAGCGGTCCTCCTCACACTTCTGTCTGTGACCCGAGCAGGCGTCTGTGAGACCCTGCCTGGCTCCTGCAGGATCGTGTGTGACCCCTCCTCAGGTCTTTCTAAAGACCAAGGCAATGGCTTTGTCATCCCCCTCACCTCATCTGCGGCAGGACCTCCCGGGCCACGTGGTCCTCCGGGTAAAGCAGGGCCCGCGGGGCCAGCCGGACCCTCGGGTATAGGCTCGTCGAGTACGGGAGGTGTGGCGTTCAGCGCTGCGCTGCAGGACGCCATCGCCAAGAACGATGTGATAAAGTTTAACGACGTGATTACTAATCTGGGAGGAGGTTATGACTCCTCCACCGGGACCTTCACCTGTAAAACAGCGGGAGTGTACTACTTCATCTTTAGCATTGTCAAGACCGGCCAGAACCTACGAGTGGACTTGTTTCTTAATGACCAAACGGCTGTGGCGAGTGCGGTGGCAGTGGACGTTCTTCACACAGACACCGCAAGCAACAGCGTAGTGCTGCAGCTGAAAGCTGGGGACCGGCTGTACGTCCGGCTGAACAGCAGCGAACTAAGCAAGAGGGACTCACAGAGCCGCTTCAGTATCTTCTCTGGTTACCTGCTGTATGAGATCTGAGACCAACAGACAAACATGATGTCTTTCAGCTTTAACCTCTTTCTGGTAGTTTGAAGAGGCCTCTTTGAGTTCAGACTGCGCGTTTCCTTGAATAAAGTATGAATTCTCTGGCAA

Function

NR:

description
PREDICTED: complement C1q-like protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU202777 False 766 lncRNA 0.53 3 9697662 9751337
TU202778 True 883 lncRNA 0.53 2 9749677 9751337
XM_043218587.1 False 790 mRNA 0.54 2 9749816 9751383

Neighbor

gene id symbol gene type direction distance location
ttr ttr,LOC107712897,LOC107588917,LOC107687167,LOC107712388,LOC107656732,LOC107559732 coding downstream 13750 9680846 ~ 9683912 (-)
LOC122325172 NA coding downstream 31863 9659140 ~ 9665799 (-)
LOC122325171 NA coding downstream 38969 9655671 ~ 9658693 (-)
LOC122325177 LOC107712849,LOC107687193 coding downstream 114012 9579907 ~ 9583650 (-)
mep1ba mep1b,LOC107581508,LOC107687173,LOC107581493 coding downstream 121988 9555458 ~ 9575674 (-)
LOC122325472 dhcr24,LOC107687183,LOC107581458,LOC107566150 coding upstream 232139 9983522 ~ 9985904 (-)
psma8 psma8,LOC103029839,LOC100304914,LOC107572146,LOC107723426 coding upstream 707808 10459191 ~ 10462437 (-)
gpr132b LOC107561042,LOC107723405,LOC107701477,LOC107684800,LOC107746348,LOC107572145 coding upstream 726306 10477689 ~ 10484360 (-)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516,LOC107572140 coding upstream 733123 10484506 ~ 10493235 (-)
cdc42bpb cdc42bpb,LOC107684799,LOC107746049,LOC107723369,LOC107701514 coding upstream 742703 10494086 ~ 10550573 (-)
G137267 LOC107712887,LOC107559744,LOC107755683,LOC107687178,LOC107581453 non-coding downstream 161585 9459505 ~ 9536077 (-)
G137264 adcy1a,LOC107559745,LOC107708029,LOC107697434,LOC107687179,LOC107581454,LOC107712833 non-coding downstream 249751 9440237 ~ 9447911 (-)
G137255 NA non-coding downstream 293121 9404130 ~ 9404541 (-)
G137253 NA non-coding downstream 296453 9400382 ~ 9401209 (-)
G137250 NA non-coding downstream 304433 9392950 ~ 9393229 (-)
G137346 NA non-coding upstream 456691 10208074 ~ 10208585 (-)
G137348 NA non-coding upstream 480641 10232024 ~ 10235306 (-)
G137356 NA non-coding upstream 526556 10277939 ~ 10278186 (-)
G137441 NA non-coding upstream 706870 10458253 ~ 10458790 (-)
G137448 NA non-coding upstream 805362 10556745 ~ 10562461 (-)
pcsk9 pcsk9,LOC107687184,LOC107566146,LOC107697372,LOC107716550,LOC107578795 other downstream 362601 9325653 ~ 9335061 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other downstream 414279 9255548 ~ 9283383 (-)
G137056 NA other downstream 875943 8821154 ~ 8821719 (-)
G137054 LOC107660256,LOC107566921 other downstream 878335 8818854 ~ 8819327 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other downstream 1096707 8591692 ~ 8600955 (-)
G137330 NA other upstream 186582 9937965 ~ 9938877 (-)
G137451 NA other upstream 815914 10567297 ~ 10570737 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other upstream 970538 10721921 ~ 10724069 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other upstream 1380041 11131424 ~ 11136612 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other upstream 1390562 11141945 ~ 11182183 (-)

Expression


Co-expression Network