G137621 (LOC107739294,LOC107553647)


Basic Information

Item Value
gene id G137621
gene name LOC107739294,LOC107553647
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11191659 ~ 11194847 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU203252
GGCTAATTTAATCTAAGGCAGACACGCAGAATGTGCACAATACGCGCCTGTTTAACTGTGAAGCGCGCCGTAGCGCGTCTCGGTGTGTGTCTTTAAGTAGTACGCTGCGGTAGGAGGAGTTGTAGCGGTTGTGACGCCGCCAGCGGAGCCGTGGTGCTGAGCTGAACAGCGCCTGTCCACCTGCAGTAGGGCGCAAGACCGACCGGGACAATATTCTCTCGCATCGCTCAGCGGAACCCTGCAAACCGACAGCACGTCTCACAGGAATTATCTCCACGTTTGCGAATAACAAACATCTGCCTCCTCTGCCGATGGCCAAAATGAAAACCGGCTGCGCGATTCTTGTGGCGTGTGCCTTAGTTGCGGGCACCTCTTTGGGGAGTCACGGAAACGCTCAGACCATCGCTCCATGCAGACCAGGTTTCTCCCAGAGTTTCTACACCGTATTTGTCCCCAGGGGTGTGCTGCAAGGCCTGAACATTCACAAAG

Function

NR:

description
PREDICTED: cadherin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203252 True 489 lncRNA 0.55 2 11191659 11194847

Neighbor

gene id symbol gene type direction distance location
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 124253 11061914 ~ 11067406 (-)
trnal-cag_34 NA coding downstream 259015 10932562 ~ 10932644 (-)
eif2b4 eif2b4,LOC107723173,LOC107589057,LOC107697314,LOC107701499,LOC107561932 coding downstream 259344 10925463 ~ 10932315 (-)
snx17 snx17,LOC107723180,LOC107701503,LOC107746210 coding downstream 268777 10895988 ~ 10922882 (-)
si:ch211-278j3.3 LOC107589055,LOC107723221,LOC107746185,LOC107561935,LOC107701501 coding downstream 303432 10871839 ~ 10888227 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding upstream 106297 11301144 ~ 11319919 (-)
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding upstream 145016 11339863 ~ 11360039 (-)
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding upstream 289290 11484137 ~ 11506327 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding upstream 409783 11604630 ~ 11607753 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding upstream 474293 11669140 ~ 11676651 (-)
LOC122325111 NA non-coding downstream 76734 11113796 ~ 11114925 (-)
LOC122325152 NA non-coding downstream 254285 10934946 ~ 10937374 (-)
G137588 NA non-coding downstream 384879 10806521 ~ 10806780 (-)
G137578 LOC107684790,LOC107723476,LOC107589053 non-coding downstream 405324 10785953 ~ 10786335 (-)
G137573 rp1l1b,LOC107589053,LOC107723476,LOC107684790,LOC107561938,LOC107746156 non-coding downstream 412253 10779130 ~ 10779406 (-)
G137644 NA non-coding upstream 20379 11215226 ~ 11227365 (-)
G137751 NA non-coding upstream 417176 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 428746 11623593 ~ 11631094 (-)
G137748 NA non-coding upstream 433777 11628624 ~ 11631015 (-)
LOC122325628 NA non-coding upstream 434281 11629128 ~ 11629249 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 9476 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 55047 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 467590 10721921 ~ 10724069 (-)
G137451 NA other downstream 620922 10567297 ~ 10570737 (-)
G137330 NA other downstream 1252782 9937965 ~ 9938877 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other upstream 172076 11366923 ~ 11368490 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 487558 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 1023916 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 1027963 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 1046954 12241801 ~ 12280312 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G249555 NA non-coding CI01000058 null 3324766 ~ 3508770 (-)
eurasian perch (Perca fluviatilis) stxbp4 stxbp4 misc NC_053132.1 CM020929.1 389460 ~ 485610 (-)