G137949 (mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285)


Basic Information

Item Value
gene id G137949
gene name mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 12222810 ~ 12224270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU203715
GGAGGACTGGACAGTGGAGCTAAGAATGCTCTTTGCCTCCTCCCGACAGCAGTTAAAATACTGACCGAAAGAGCTTCCCACAGTGACTGGGTCCTCAGAACCAGCTGGCTCTCCCACCTTACCAAATCATACAAACATGCAGATGCAGCTCTGATGCAGTTGGAGGCAGGATGCACAGCGTTGAAAGCTGTATTCAGCAGCAAGCTCATCGGGAAAGGCAAATGTCTGGCAGAGCTCTTGCAACCACACAGCACAGATGACTACAGGATTTTGGTAGACATGCGCTGGAACAAGCAGTACTTGGACATTTTGGCCAACACCTGCAACTTTGAGGATGAGGAGCGATACATGGAATTCATGGAAGCATTGAACGCTGTTGCTAACAGAATCACATTGCTGATGGACCGAGAGGAGAGAGCAGCTATTAACAGCAGTGCTGGAAACAGTTCTCCTCATAACAGCGCGCTTAGGCTGGCCACTGCCTTCTCAAAAGGGACGGTGGACATAGGCCACCTGCCTCATCCAGTGCTGGTCCACCTTCGCTCGTTCTTTGACCTCTGGGATTCCTTCGTACTACAAGCTGTGCAGTTAGGCCAGCCCTACATCTCCGACCACCTCATGTTTGAGatcCTGCAGCTGCTGCAGTGGAGGGATCGTTTCTGGCATGTGTGTAACTCTCTGTCCGCGGATActcggagtgtgtgtgtgatgtcctTGCACTGGCAGTGGGT

Function

symbol description
mdn1 Predicted to enable ATP binding activity. Predicted to be involved in rRNA processing and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Orthologous to human MDN1 (midasin AAA ATPase 1).

NR:

description
PREDICTED: midasin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203715 True 731 TUCP 0.52 6 12222810 12224270

Neighbor

gene id symbol gene type direction distance location
katna1 katna1,LOC107755263,LOC107683938,LOC107737259,LOC107597454,LOC107665349 coding downstream 19890 12197454 ~ 12202920 (-)
LOC122324548 NA coding downstream 37385 12181779 ~ 12185425 (-)
LOC122324547 NA coding downstream 41464 12177900 ~ 12181346 (-)
LOC122325482 katna1,LOC107755263,LOC107683938,LOC107737259,LOC107597454,LOC107665349 coding downstream 158787 12059675 ~ 12064023 (-)
cbr4 cbr4,LOC107597475,LOC107665353,LOC107755259 coding downstream 312075 11907560 ~ 11910735 (-)
bach2b bach2,bach2b,LOC107755268,LOC107683933,LOC107737315,LOC107665358 coding upstream 70862 12295132 ~ 12380554 (-)
map3k7 map3k7,LOC107665363,LOC107597461,LOC107683934,LOC107601937 coding upstream 166331 12390601 ~ 12405649 (-)
epha7 epha7,LOC107665377,LOC107683932,LOC107737386 coding upstream 790673 13014943 ~ 13089645 (-)
itsn2a itsn2a,LOC107737380,LOC107665294,LOC107737296,LOC107556117 coding upstream 1045050 13269320 ~ 13306686 (-)
mrpl19 mrpl19,LOC107683989,LOC107737376,LOC107665319,LOC107737334 coding upstream 1083596 13307866 ~ 13310366 (-)
G137932 NA non-coding downstream 25385 12195529 ~ 12197425 (-)
G137944 NA non-coding downstream 28451 12053777 ~ 12194359 (-)
G137930 NA non-coding downstream 186688 12035478 ~ 12036122 (-)
G137916 sh3rf1,LOC107755262,LOC107683940,LOC107601942,LOC107739375,LOC107665389 non-coding downstream 208834 11945258 ~ 12013976 (-)
G137831 LOC107755258,LOC107601947,LOC107597468,LOC107718414,LOC107665352 non-coding downstream 328921 11893267 ~ 11893889 (-)
G138016 NA non-coding upstream 649436 12873706 ~ 12881309 (-)
G138042 NA non-coding upstream 895269 13119539 ~ 13119773 (-)
LOC122325041 NA non-coding upstream 989801 13214071 ~ 13260480 (-)
G138186 NA non-coding upstream 1143599 13367869 ~ 13368510 (-)
G138158 NA non-coding upstream 1155152 13379422 ~ 13383963 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 3171 12218763 ~ 12219639 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other downstream 539492 11682405 ~ 11683318 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 854320 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 1040627 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 1086198 11131424 ~ 11136612 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 17531 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1036649 13260919 ~ 13264284 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other upstream 1199688 13423958 ~ 13447388 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other upstream 1323006 13547276 ~ 13548591 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other upstream 1440236 13664506 ~ 13692007 (-)

Expression


Co-expression Network