G137967 (mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285)



Basic Information


Item Value
gene id G137967
gene name mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 12218763 ~ 12219639 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU203734
TACAGGAAGAGTGGAGAGGGCGGAGTCTGTCCTCACAGCTGCTCACAGGGGCGGAGCTTGAGGAGAGTAGCACAACTGACAACTTCCAGCATCCTCGCATCAGgtaCTTGTGGATCCGTATGCAGCAGGTGAAGGAGCAGATTTCTGAACTGAGTCGTAAACAAGCCTGCCGCCCTCCTGACGCCCAGTATGGTCGTCTGTATCAGGAACTTCAGCACTACCTGTGCAGTATCGGCCAGCCAGCTGCAGTGGGCGACCTGCTCTCCCACCTCCTGAAAGCCTTACAGGCCCCAAAATCAAGATTGGGAATTCAGGGGTTGTTGAAGGAGGAGGCCGTTTGGCAGGCTTCACAGCACCGCTTTGCCCAGCGGCTGGTCGAGGAGTACCCTCTCTATCC

Function


symbol description
mdn1 Predicted to enable ATP binding activity. Predicted to be involved in rRNA processing and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Orthologous to human MDN1 (midasin AAA ATPase 1).

NR:

description
PREDICTED: midasin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU203734 True 397 TUCP 0.57 2 12218763 12219639

Neighbor


gene id symbol gene type direction distance location
katna1 katna1,LOC107755263,LOC107683938,LOC107737259,LOC107597454,LOC107665349 coding downstream 15843 12197454 ~ 12202920 (-)
LOC122324548 NA coding downstream 33338 12181779 ~ 12185425 (-)
LOC122324547 NA coding downstream 37417 12177900 ~ 12181346 (-)
LOC122325482 katna1,LOC107755263,LOC107683938,LOC107737259,LOC107597454,LOC107665349 coding downstream 154740 12059675 ~ 12064023 (-)
cbr4 cbr4,LOC107597475,LOC107665353,LOC107755259 coding downstream 308028 11907560 ~ 11910735 (-)
bach2b bach2,bach2b,LOC107755268,LOC107683933,LOC107737315,LOC107665358 coding upstream 75493 12295132 ~ 12380554 (-)
map3k7 map3k7,LOC107665363,LOC107597461,LOC107683934,LOC107601937 coding upstream 170962 12390601 ~ 12405649 (-)
epha7 epha7,LOC107665377,LOC107683932,LOC107737386 coding upstream 795304 13014943 ~ 13089645 (-)
itsn2a itsn2a,LOC107737380,LOC107665294,LOC107737296,LOC107556117 coding upstream 1049681 13269320 ~ 13306686 (-)
mrpl19 mrpl19,LOC107683989,LOC107737376,LOC107665319,LOC107737334 coding upstream 1088227 13307866 ~ 13310366 (-)
G137932 NA non-coding downstream 21338 12195529 ~ 12197425 (-)
G137944 NA non-coding downstream 24404 12053777 ~ 12194359 (-)
G137930 NA non-coding downstream 182641 12035478 ~ 12036122 (-)
G137916 sh3rf1,LOC107755262,LOC107683940,LOC107601942,LOC107739375,LOC107665389 non-coding downstream 204787 11945258 ~ 12013976 (-)
G137831 LOC107755258,LOC107601947,LOC107597468,LOC107718414,LOC107665352 non-coding downstream 324874 11893267 ~ 11893889 (-)
G138016 NA non-coding upstream 654067 12873706 ~ 12881309 (-)
G138042 NA non-coding upstream 899900 13119539 ~ 13119773 (-)
LOC122325041 NA non-coding upstream 994432 13214071 ~ 13260480 (-)
G138186 NA non-coding upstream 1148230 13367869 ~ 13368510 (-)
G138158 NA non-coding upstream 1159783 13379422 ~ 13383963 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other downstream 535445 11682405 ~ 11683318 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 850273 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 1036580 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 1082151 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 1494694 10721921 ~ 10724069 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 3171 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 22162 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1041280 13260919 ~ 13264284 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other upstream 1204319 13423958 ~ 13447388 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other upstream 1327637 13547276 ~ 13548591 (-)

Expression



Co-expression Network