gtf2h5 (gtf2h5,tf2h5,LOC107659223,LOC107721375)


Basic Information

Item Value
gene id gtf2h5
gene name gtf2h5,tf2h5,LOC107659223,LOC107721375
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13547276 ~ 13548591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU204126
GAAGACCTTTGTTAGTAGACGGTGGACGCTAGGGCTAAAACACACTGACAATTGACAGATAAACAAAAATCACAAAACTTAAAACCGAAGAACCGGAAGCGTTTACACGTCCCTTCTAAAATGGTTAATGTCTTGAAAGGAGTTCTCATTGAATGtGACCCAGCTATGAAGCAATTTCTTCTATATCTGGATGAAACGTCGGCACTGGGGAAGAAATTTATCATCCAGGATTTGGACGACACGCATGTTTTCATCCTAGCCGGAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTCCCCATCACCCAGAAATAAATGTCTGAATCTGACAGCAGACCTTACAATCTGTGGGAGCAGATGGATGTAGAGATTCTTTCTGCGCAattgcacaaacacagatgTAACTGAAATATATAGATGACTGGCTACCAAGATGATGCCTGTTATCCCTGTTTTAGTTTGACTGTGATGCATACATTATATGCTTTACGTCGCATATGTTTCAAAGACAGCTTCTTGAATCTTTGCTCTGTTTTGCCAGCATGGTCAATGAATTGTGTTTTGCGCACAAGATGGAATTAGCTGCAGAAAGGAgcgtttaatgtgtttttcagcatttcacaGTTTGTACACAAACTGAAAGCAGATGGTTGATAACCGTGTGATTTCTATACatgcatcaaataaaaaactttaaaatgtgattttg
>TU204127
GAAGACCTTTGTTAGTAGACGGTGGACGCTAGGGCTAAAACACACTGACAATTGACAGATAAACAAAAATCACGtaagataactttttttttccaaaagtggcGTGTTTTTAAGATATATATGATTTGTGAATATATCTTTGGAGATACGCAAAGTATGTGAAATGTTTGTAACGATTACGAACATTCACGGTAACGTTAATCTGttcagtttttgttgttatttctaATGTTCAGAAAACTTAAAACCGAAGAACCGGAAGCGTTTACACGTCCCTTCTAAAATGGTTAATGTCTTGAAAGGAGTTCTCATTGAATGtGACCCAGCTATGAAGCAATTTCTTCTATATCTGGATGAAACGTCGGCACTGGGGAAGAAATTTATCATCCAGGATTTGGACGACACGCATGTTTTCATCCTAGCCGGAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTCCCCATCACCCAGAAATAAATGTCTGAATCTGACAGCAGACCTTACAATCTGTGGGAGCAGATGGATGTAGAGATTCTTTCTGCGCAattgcacaaacacagatgTAACTGAAATATATAGATGACTGGCTACCAAGATGATGCCTGTTATCCCTGTTTTAGTTTGACTGTGATGCATACATTATATGCTTTACGTCGCATATGTTTCAAAGACAGCTTCTTGAATCTTTGCTCTGTTTTGCCAGCATGGTCAATGAATTGTGTTTTGCGCACAAGATGGAATTAGCTGCAGAAAGGAgcgtttaatgtgtttttcagcatttcacaGTTTGTACACAAACTGAAAGCAGATGGTTGATAACCGTGTGATTTCTATACatgcatcaaataaaaaactttaaaatgtgattttg
>XM_043219196.1
CCTTCCAGCAGAGTGCAGTAGAGCTCACAGATCAAACATCACTCTTAGTAGAAGAAGACCTTTGTTAGTAGACGGTGGACGCTAGGGCTAAAACACACTGACAATTGACAGATAAACAAAAATCACAAAACTTAAAACCGAAGAACCGGAAGCGTTTACACGTCCCTTCTAAAATGGTTAATGTCTTGAAAGGAGTTCTCATTGAATGtGACCCAGCTATGAAGCAATTTCTTCTATATCTGGATGAAACGTCGGCACTGGGGAAGAAATTTATCATCCAGGATTTGGACGACACGCATGTTTTCATCCTAGCCGGAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTCCCCATCACCCAGAAATAAATGTCTGAATCTGACAGCAGACCTTACAATCTGTGGGAGCAGATGGATGTAGAGATTCTTTCTGCGCAattgcacaaacacagatgTAACTGAAATATATAGATGACTGGCTACCAAGATGATGCCTGTTATCCCTGTTTTAGTTTGACTGTGATGCATACATTATATGCTTTACGTCGCATATGTTTCAAAGACAGCTTCTTGAATCTTTGCTCTGTTTTGCCAGCATGGTCAATGAATTGTGTTTTGCGCACAAGATGGAATTAGCTGCAGAAAGGAgcgtttaatgtgtttttcagcatttcacaGTTTGTACACAAACTGAAAGCAGATGGTTGATAACCGTGTGATTTCTATACatgcatcaaataaaaaactttaaaatgtga

Function

symbol description
gtf2h5 Predicted to be involved in nucleotide-excision repair, preincision complex assembly; phosphorylation of RNA polymerase II C-terminal domain; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex; transcription factor TFIIH core complex; and transcription factor TFIIH holo complex. Human ortholog(s) of this gene implicated in photosensitive trichothiodystrophy 3. Orthologous to human GTF2H5 (general transcription factor IIH subunit 5).

NR:

description
general transcription factor IIH subunit 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204126 False 730 lncRNA 0.40 3 13547276 13548538
TU204127 True 893 lncRNA 0.38 2 13547276 13548538
XM_043219196.1 False 778 mRNA 0.40 3 13547281 13548591

Neighbor

gene id symbol gene type direction distance location
si:dkey-12h9.6 si:dkey-12h9.6,LOC107659220,LOC107737319,LOC107665359,LOC107555760,LOC107556127 coding downstream 232 13538787 ~ 13547044 (-)
capn3b capn3b,LOC107659224,LOC107721354,LOC107665384,LOC107737332 coding downstream 21003 13516657 ~ 13526273 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763,LOC107556164 coding downstream 36758 13508652 ~ 13510518 (-)
mideasa elmsan1a,LOC107555757,LOC107721359,LOC107683915,LOC107665392,LOC107737312,LOC107556160 coding downstream 55183 13482405 ~ 13492093 (-)
exoc1 exoc1,LOC107683916,LOC107721360,LOC107555758,LOC107665383,LOC107556159,LOC107737311 coding downstream 69084 13466797 ~ 13478192 (-)
serac1 serac1,LOC107555766,LOC107737322,LOC107659155 coding upstream 67 13548658 ~ 13555425 (-)
myct1a myct1a,LOC107737339,LOC107665338,LOC107659222,LOC107555747,LOC107556166,LOC107721271 coding upstream 7335 13555926 ~ 13559395 (-)
esr1 LOC107737325,LOC107555768,LOC107556167 coding upstream 122513 13671104 ~ 13683267 (-)
armt1 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 coding upstream 136408 13684999 ~ 13689387 (-)
akap12b LOC107721347,LOC107555771,LOC107659213,LOC107711639,LOC107665356 coding upstream 151501 13700092 ~ 13732388 (-)
G138232 NA non-coding downstream 32143 13514765 ~ 13515133 (-)
G138221 slc35f6,LOC107721386,LOC107555739,LOC107683918,LOC107737338,LOC107665330 non-coding downstream 49250 13495682 ~ 13498026 (-)
G138217 zgc:153896,LOC107721358,LOC107665343,LOC107737337,LOC107556161 non-coding downstream 68252 13478772 ~ 13479024 (-)
G138159 LOC107556152 non-coding downstream 153681 13388921 ~ 13393595 (-)
G138162 NA non-coding downstream 155933 13385970 ~ 13391343 (-)
G138335 foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144 non-coding upstream 281986 13830577 ~ 13832060 (-)
G138351 NA non-coding upstream 301349 13849940 ~ 13850174 (-)
G138399 LOC107711644,LOC107659205,LOC107721344,LOC107602456,LOC107665390,LOC107602691,LOC107555778 non-coding upstream 392637 13941228 ~ 13999349 (-)
G138407 NA non-coding upstream 396669 13945260 ~ 13945737 (-)
G138401 LOC107721343,LOC107721342,LOC107583935,LOC107721341,LOC107659208 non-coding upstream 399537 13948128 ~ 13953887 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 99888 13423958 ~ 13447388 (-)
LOC122324483 NA other downstream 282992 13260919 ~ 13264284 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other downstream 1266964 12241801 ~ 12280312 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1323006 12222810 ~ 12224270 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1327637 12218763 ~ 12219639 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other upstream 115915 13664506 ~ 13692007 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other upstream 214744 13763335 ~ 13767824 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other upstream 645142 14193733 ~ 14198528 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 892942 14441533 ~ 14445925 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 1444508 14993099 ~ 15015269 (-)

Expression


Co-expression Network