G138335 (foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144)


Basic Information

Item Value
gene id G138335
gene name foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13830577 ~ 13832060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU204248
tgtcacattttcttttattaacaaaagtaCAACTGCATGTTGTCCAACTGAGCACAGCTCTAAATAAACCATCATATTTACACAGACTTTAAAACACGGTACAAGCGTAACccaacacaatttttttttcaaagaagtagactacatttaaatacataatctGTCCATAATTACTGGCATGGTTATGCCATCGTTtacaagaaatgaaaacaggAATCAGTAAACACTGCACTGGCGCGACATTGATTCATCTAAGAAGACGTCTAAACAGCAGACATGCAGCACTGCGGTAAGTATTGTGCATGCATAGACTCAAATCACGAACACACACATAGGCCTAAAACACACCATTTAACAGAGGAAAGTGCACATGGCTGGTGTGTCAAACACCAAAGAGATTTAAGCGTGCGGATGTCTGCAAATCGGCTTGTTCACTTGTCACTTCACGACAGCAGAGAGTCTATTCTGAAGGGGTGAAATCCAGTCTCTTGTACAGTAGTGTGGGAGTGTGCCAAACCCGGAAGGGAATTCGGTATGTCCGGCATTCGACTGATGTTAGTAATGTCTGCCGTGTTACACCTGTAGATCGGAAAGGCGCTCGACACCTCAGAACTGACCTGGAATCCTGTCTGCGGCGGATAGCCCACGACCACCGGCAGAAAGTGCGGAGCCGCCGACAACATTAGCCTGGCTCCAAAACACGTGTCCTCTGTGCTTTTCTCCCTCCGCGTGAACGGTTTACTGAGGATGCTGTCAATGGCGAAGGAACTGGAGAACTTGGAAGTTTCGTCGCGCGCCGGGATCCGGCTGTCATCCGCAGGCGCGCGCTCCTGAGATTCCGAAGCGCTCAGGACCTTCTTGCTGATGCGCTTCCTCCTCCGGCGGAAAACGCCGTCCGCGAAAGTGTATTCACTGTGCGGGTTCAACATCCAGTAGTTGTCTTTTCCCCACGGACGCGAGGGGTCTCGcagcacttttaaaaagcagtcGTTCAACGACAAGTTGTGCCGCACGGAGTTGCGCCACCCGGTGTAGCTGCCCCGAAAGAACGGGAATTTTTTCATTAAGTACTCGTTTATTTCAGCAAGTGTGAGGCGGCCGGTGTTGGAATCGCGTATGGCCATAGCAATGAGCGCGATGTAGGAGTATGGTGGTTTGGGTCTACGCGTATATGGTTTCGCCTTCCCGTCCGAAACGGGGGCACTTGGTCCTGGGCTGTTGGCTGAACAGTCTCCATCCGAGCCCAATTCCTCCTCCGTGGACAGCGGTGAAGCCACGTTCACGTCCATGTCACTGCACAGGTCCAGCTGCTTGTCCACAAGGCGACTCGCAGAGAAAACCTCCAACTTCATTGTAAGCCGCCTCTGTCACTTTACGGTAGCTGAGTAGCTCAGAGAGGTCTTGTTTTGAACGACGCTTTCGGTCTCGGTCAACGTCAAAGTCTATTAAAGAAACAAGAGTTATCACTTCCTACCGGTTAAAAA

Function

symbol description
foxq1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in gut and mandibular arch skeleton. Orthologous to human FOXQ1 (forkhead box Q1).

NR:

description
PREDICTED: forkhead box protein Q1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204248 True 1484 lncRNA 0.50 1 13830577 13832060

Neighbor

gene id symbol gene type direction distance location
exoc2 exoc2,LOC107721345,LOC107659211,LOC107711641,LOC107665386,LOC107555744 coding downstream 26206 13781126 ~ 13804371 (-)
si:dkey-25e12.3 LOC107665334,LOC107659167,LOC107721285,LOC107556143,LOC107555748 coding downstream 59728 13768600 ~ 13770849 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107659212,LOC107721348,LOC107665399,LOC107711640,LOC107556131 coding downstream 68627 13735269 ~ 13761950 (-)
akap12b LOC107721347,LOC107555771,LOC107659213,LOC107711639,LOC107665356 coding downstream 98189 13700092 ~ 13732388 (-)
armt1 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 coding downstream 141190 13684999 ~ 13689387 (-)
gmds gmds,LOC107721371,LOC107711642 coding upstream 19972 13852032 ~ 13910497 (-)
mylk4b mylk4b,LOC107721383,LOC107659202,LOC107555775,LOC107665331,LOC107711643,LOC107602975 coding upstream 79657 13911717 ~ 13938418 (-)
ftr79 LOC107711621,LOC107665371,LOC107602424,LOC107665304 coding upstream 131318 13963378 ~ 13968189 (-)
ftr97 LOC107659198,LOC107711646,LOC107602372,LOC107583926,LOC107665304,LOC107721339 coding upstream 136332 13968392 ~ 13981346 (-)
itpk1a itpk1a,LOC107586239,LOC107659161,LOC107602955,LOC107711651,LOC107665329 coding upstream 202679 14034739 ~ 14050388 (-)
G138232 NA non-coding downstream 315444 13514765 ~ 13515133 (-)
G138221 slc35f6,LOC107721386,LOC107555739,LOC107683918,LOC107737338,LOC107665330 non-coding downstream 332551 13495682 ~ 13498026 (-)
G138217 zgc:153896,LOC107721358,LOC107665343,LOC107737337,LOC107556161 non-coding downstream 351553 13478772 ~ 13479024 (-)
G138159 LOC107556152 non-coding downstream 436982 13388921 ~ 13393595 (-)
G138162 NA non-coding downstream 439234 13385970 ~ 13391343 (-)
G138351 NA non-coding upstream 17880 13849940 ~ 13850174 (-)
G138399 LOC107711644,LOC107659205,LOC107721344,LOC107602456,LOC107665390,LOC107602691,LOC107555778 non-coding upstream 109168 13941228 ~ 13999349 (-)
G138407 NA non-coding upstream 113200 13945260 ~ 13945737 (-)
G138401 LOC107721343,LOC107721342,LOC107583935,LOC107721341,LOC107659208 non-coding upstream 116068 13948128 ~ 13953887 (-)
G138405 NA non-coding upstream 150114 13982174 ~ 13991416 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 62753 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 138570 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 281986 13547276 ~ 13548591 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 383189 13423958 ~ 13447388 (-)
LOC122324483 NA other downstream 566293 13260919 ~ 13264284 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other upstream 361673 14193733 ~ 14198528 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 609473 14441533 ~ 14445925 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 1161039 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 1165065 14997125 ~ 15003202 (-)
LOC122325611 NA other upstream 2010338 15842398 ~ 15842618 (-)

Expression


Co-expression Network