srsf5b (srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514)


Basic Information

Item Value
gene id srsf5b
gene name srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14993099 ~ 15015269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU204892
CTCAGATCAGCGCTGAGCGTCGCTCGCAGCTCTACACTGACTCCATTTTGTGTGAGGGGCTGTTCGTACAGACGCGACACATTCAGAGGAGAAACACCAGGTAGAGGAGGATGAGCGGTTGCCGTATTTTCATCGGTCGATTGAACCCCTCTGCTCGAGAGAAGGACGTCGAGCGGTTCTTCAAGGGTTATGGAAAAATCAGGGACATTGACCTAAAAAGAGGCTTCGGATTTGTAGAATTTGATGATCCGAGAGATGCAGAAGATGCCGTTTATGAGCTTGATGGGAAAGAGCTCTGCAATGAGAGGGTGACCATTGAACATGCCCGTGTCCGTCTGCGTGGGGGCCGAGGCCGTGGTGGTGGCGGCGGAGGACGTTTTCCTGGTCGGTATGCTCGTGGCTCTCAGGACAGCCGAAGGAATCCTCCACCAATGCGCACGGAGAATCGCCTCATTGTGGAGAATTTGTCGTCGAGAGTCAGCTGGCAGCCTGACTGTTGTGTCGTATGGAAGAGCTCGCTAATGGTGGAGTTAACCCCTACAGGGCCCCTCTCTCTGCTTAAGCCACTCCCATTGTGCCCCACGCCTAGTTGACCTCCGCCGATCGCATGAGAGCTCTCTGTGAGTGATGCCCTCTCGCTCTAGACGCAGCGGCTGCCGCTACAAAGCGCAGTTTGTGACGGTGCCGAgccgaaagagagagagagagacacagagtgaaagcgagagagagaggggcagaaagagagcgagagaaaaagagaaacatacGCAGTCAATCGAGGGGTTCGGTAATTTGAGAGGCTTCGATCGGTATACTCACCCACCCTGCTCTCTGGTGGCCCCGAGGATAAAATCTCCAGGTTATGGCCCCAGCCCGATGGGTACGTTCCCAGGTATTAGTCTATGATCTCTTCCTCGCTGTTCACGCTCAGTGCCCTTGAGGGGACGGCACAAATAGGGTACGGTCGATGGAGGGATGCCCTGTGCTCCACTACACTGTTTACACTTGTGTTTTGGTAAGAATGCATTTGccatgtaaatgtacattttatctAATGTGGGGCCCTTTTATATGAGCCGCTTCACATATTTCCTCTGCTAGTCTTGTAGCACGGGAGTCCGGGAATGTCGCAGCATTGCAAGCCAAAAGTATCTTTTATTGATGCGCCACCTCTTTTCATTTCGGCCGATAAGACACTGAAGCCTTTGTGCGTACACTACGTTTAGAAGCCAGGGCTGGCCTCGCAAAGCTTTGAATAGAGATTTATAAGAGCGTGAAATGTGGCCGATTCGCTCCTCCGTAACGCGTAGCGATTCAAAGTCGTCCGCTTGGATTTCACTTTTTGCactcttttctgttttattgtcaaTCACTATACGTTTTTGCTGATATGCACGCGCCGAAATTTTGAGGCTCGAGCATGAACTGAGAGATTCTCGGACCCCGGCTTTgatagttcatttattttgatactTCATAAAACGTGTAAAAACCATCATCTCAGTTGCTTGGCTAAGTCAAAATGCTGGTGTACTGTGTGTAGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAAGCTTAATGAGGGTGTGGTTGAGTTTGCTTCTCATAGTGATCTAAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGTAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGAACTCGGTCTCGTTCAAACAGCTCATCCCGTTCTCGTTCCCGAGGGCGCTCGACGTCCCGTTCTCGTAGCCGCTCCCATTCCCACAGCCCCAAATCACATAACCGTTCCAGAAGCCGGTCGCGTTCGGCCAGCGCTTCTCCCGTGCGGCCCAAAGAAGCTCCACGTGCTGAATCAGCATCGCCGCCGGCCCCGGCTCAGCGCCCCCCACCGTCCCGCTCCCCGTCCGCTGACAGCCGTCACTAGCCTCCCCTAACCCTGTGTGCTGAGAGATGCGTCTGCGTTCAAACGCTGCAAGAGGCTGATGAAGTTAGCAATATTGTCCCATCTTTGGTCAGTTTAGGTCCTGTAAGTGAAGGGACAGCCTCTCCACACGCCAGGAGTTTCACAGCACGGGCTCTGTTGCTAGTTTAAAGGCATTTGATCAGGAGAGTCACATTAAATCAGGAATATACTGCTGTTTGGggtgggattttttttgttcatgtctAAAATGGGTATGTGGTcgttatttttatcatatacaGAGTGAGGTTTGATTGATGTCGAGAGTctttaattgtataaatatatttatggacGAGTCGGtaaatgtgatttgttttcGAGTAGCGCGACCTTAAGATGTGCGTTGAATACTGAATTAGGGTTTTAAGAATAATTAATAGTATGATTCATGACATGAAGACGAGAAAAAGTGAAAGGCTGAGAAGAATACGAATTTCAAGTGCAAGAACTGCCACACAAAATGAGGAGCGAGGCCAGTACAGCCATTTCATATCCtacatataaagtaaaatgaagTTTCTAATGCTTTACAGGTCTTTCAGTGTTTTATGGAACAGCCTGTGCCGTTCGGGCCAGctaactgtttatttttgttacttcatGAATACACAGTATGTTTGTATTGTGGATGCTTGAATTATAATTAAAGAATCGTCCAAGTTCCCTCCACACTGCATGATATACACCCTATTCATATGTATGTACTTAATTTGTCATTGTGGATACACCATTTGAATGTTGCATTAGTTTGTAGGAGTGAATTATGCTTTTTTGCAATACAGcttttgttaaacaaaacagGATATGATTTTAACGTCATTTCTGATGCGTCGTGTATTCcggttttatgtaaaaaatcaGGTTTTGTCTGGATATGTTTTGATGCACGTGTTACTTTTCCGTACCACGGTACAAATATTACACATGacaatgtttttgaacatttataaaGTTTGTGTAGCGCTGtcaaaaaggaataaattactgaaAAACCGTTAaaaaaaaaaaaaaaaaaaaaaaaaatcaaaaattacattagatttaatatatttaataatttaattatatttatatacacaagataattcaagacatttaaaaaactaaataaataatactaaattaacACTGCCCCCAACACACAGGCAACATTTCATAATTGGGTCATCCCATATTTGAATCAGCCAACCGGAATCACGTATATAATCTAATGGGGGTTCATTCAGATAGGGTTGACATGAAATAataagaattacaaaaaaacatttgggatCCATacttcaa
>TU204893
CTCAGATCAGCGCTGAGCGTCGCTCGCAGCTCTACACTGACTCCATTTTGTGTGAGGGGCTGTTCGTACAGACGCGACACATTCAGAGGAGAAACACCAGGTAGAGGAGGATGAGCGGTTGCCGTATTTTCATCGGTCGATTGAACCCCTCTGCTCGAGAGAAGGACGTCGAGCGGTTCTTCAAGGGTTATGGAAAAATCAGGGACATTGACCTAAAAAGAGGCTTCGGATTTGTAGAATTTGATGATCCGAGAGATGCAGAAGATGCCGTTTATGAGCTTGATGGGAAAGAGCTCTGCAATGAGAGGGTGACCATTGAACATGCCCGTGTCCGTCTGCGTGGGGGCCGAGGCCGTGGTGGTGGCGGCGGAGGACGTTTTCCTGGTCGGTATGCTCGTGGCTCTCAGGACAGCCGAAGGAATCCTCCACCAATGCGCACGGAGAATCGCCTCATTGTGGAGAATTTGTCGTCGAGAGTCAGCTGGCAGGTGAGCATTCAGTGGTTTCCTATCAAGTTTTGTCGAAGTCAGTCATATTCCCAGTCActgcaaatgacaaaaaaaataaggatTTCCTTCATACATGAATAGAATATGTAGAgttatgttaatttaattactttgaCTATCCAGTTACATGTAAATCGATGGCAAAAATTGTCATTCTGAGATTAATGTCGAATTCAAGGTCATGTAATAAATGCTCCATTAGTTGTAGAGAAGAGGAAACGGTAAGGTTAAGTCACTTTGCCTCTGTTTTAACCAATTGTTCACCCCTCTATTTGCCAGCCTGACTGTTGTGTCGTATGGAAGAGCTCGCTAATGGTGGAGTTAACCCCTACAGGGCCCCTCTCTCTGCTTAAGCCACTCCCATTGTGCCCCACGCCTAGTTGACCTCCGCCGATCGCATGAGAGCTCTCTGTGAGTGATGCCCTCTCGCTCTAGACGCAGCGGCTGCCGCTACAAAGCGCAGTTTGTGACGGTGCCGAgccgaaagagagagagagagacacagagtgaaagcgagagagagaggggcagaaagagagcgagagaaaaagagaaacatacGCAGTCAATCGAGGGGTTCGGTAATTTGAGAGGCTTCGATCGGTATACTCACCCACCCTGCTCTCTGGTGGCCCCGAGGATAAAATCTCCAGGTTATGGCCCCAGCCCGATGGGTACGTTCCCAGGTATTAGTCTATGATCTCTTCCTCGCTGTTCACGCTCAGTGCCCTTGAGGGGACGGCACAAATAGGGTACGGTCGATGGAGGGATGCCCTGTGCTCCACTACACTGTTTACACTTGTGTTTTGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAAGCTTAATGAGGGTGTGGTTGAGTTTGCTTCTCATAGTGATCTAAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGTAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGAACTCGGTCTCGTTCAAACAGCTCATCCCGTTCTCGTTCCCGAGGGCGCTCGACGTCCCGTTCTCGTAGCCGCTCCCATTCCCACAGCCCCAAATCACATAACCGTTCCAGAAGCCGGTCGCGTTCGGCCAGCGCTTCTCCCGTGCGGCCCAAAGAAGCTCCACGTGCTGAATCAGCATCGCCGCCGGCCCCGGCTCAGCGCCCCCCACCGTCCCGCTCCCCGTCCGCTGACAGCCGTCACTAGCCTCCCCTAACCCTGTGTGCTGAGAGATGCGTCTGCGTTCAAACGCTGCAAGAGGCTGATGAAGTTAGCAATATTGTCCCATCTTTGGTCAGTTTAGGTCCTGTAAGTGAAGGGACAGCCTCTCCACACGCCAGGAGTTTCACAGCACGGGCTCTGTTGCTAGTTTAAAGGCATTTGATCAGGAGAGTCACATTAAATCAGGAATATACTGCTGTTTGGggtgggattttttttgttcatgtctAAAATGGGTATGTGGTcgttatttttatcatatacaGAGTGAGGTTTGATTGATGTCGAGAGTctttaattgtataaatatatttatggacGAGTCGGtaaatgtgatttgttttcGAGTAGCGCGACCTTAAGATGTGCGTTGAATACTGAATTAGGGTTTTAAGAATAATTAATAGTATGATTCATGACATGAAGACGAGAAAAAGTGAAAGGCTGAGAAGAATACGAATTTCAAGTGCAAGAACTGCCACACAAAATGAGGAGCGAGGCCAGTACAGCCATTTCATATCCtacatataaagtaaaatgaagTTTCTAATGCTTTACAGGTCTTTCAGTGTTTTATGGAACAGCCTGTGCCGTTCGGGCCAGctaactgtttatttttgttacttcatGAATACACAGTATGTTTGTATTGTGGATGCTTGAATTATAATTAAAGAATCGTCCAAGTTCCCTCCACACTGCATGATATACACCCTATTCATATGTATGTACTTAATTTGTCATTGTGGATACACCATTTGAATGTTGCATTAGTTTGTAGGAGTGAATTATGCTTTTTTGCAATACAGcttttgttaaacaaaacagGATATGATTTTAACGTCATTTCTGATGCGTCGTGTATTCcggttttatgtaaaaaatcaGGTTTTGTCTGGATATGTTTTGATGCACGTGTTACTTTTCCGTACCACGGTACAAATATTACACATGacaatgtttttgaacatttataaaGTTTGTGTAGCGCTGtcaaaaaggaataaattactgaaAAACCGTTAaaaaaaaaaaaaaaaaaaaaaaaaaaatcaaaaattacattagatttaatatatttaataatttaattatatttatatacacaagataattcaagacatttaaaaaactaaataaataatactaaattaacACTGCCCCCAACACACAGGCAACATTTCATAATTGGGTCATCCCATATTTGAATCAGCCAACCGGAATCACGTATATAATCTAATGGGGGTTCATTCAGATAGGGTTGACATGAAATAataagaattacaaaaaaacatttgggatCCATacttcaa
>XM_043219410.1
AAAATGACACTATAAAACAAATGTCTCGACCCTGaagtaaataattttcataCAGCAGCAGAGTGGTTATGGTGTTCGGAGCTGATCTCAGATCAGCGCTGAGCGTCGCTCGCAGCTCTACACTGACTCCATTTTGTGTGAGGGGCTGTTCGTACAGACGCGACACATTCAGAGGAGAAACACCAGGTAGAGGAGGATGAGCGGTTGCCGTATTTTCATCGGTCGATTGAACCCCTCTGCTCGAGAGAAGGACGTCGAGCGGTTCTTCAAGGGTTATGGAAAAATCAGGGACATTGACCTAAAAAGAGGCTTCGGATTTGTAGAATTTGATGATCCGAGAGATGCAGAAGATGCCGTTTATGAGCTTGATGGGAAAGAGCTCTGCAATGAGAGGGTGACCATTGAACATGCCCGTGTCCGTCTGCGTGGGGGCCGAGGCCGTGGTGGTGGCGGCGGAGGACGTTTTCCTGGTCGGTATGCTCGTGGCTCTCAGGACAGCCGAAGGAATCCTCCACCAATGCGCACGGAGAATCGCCTCATTGTGGAGAATTTGTCGTCGAGAGTCAGCTGGCAGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAAGCTTAATGAGGGTGTGGTTGAGTTTGCTTCTCATAGTGATCTAAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGTAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGAACTCGGTCTCGTTCAAACAGCTCATCCCGTTCTCGTTCCCGAGGGCGCTCGACGTCCCGTTCTCGTAGCCGCTCCCATTCCCACAGCCCCAAATCACATAACCGTTCCAGAAGCCGGTCGCGTTCGGCCAGCGCTTCTCCCGTGCGGCCCAAAGAAGCTCCACGTGCTGAATCAGCATCGCCGCCGGCCCCGGCTCAGCGCCCCCCACCGTCCCGCTCCCCGTCCGCTGACAGCCGTCACTAGCCTCCCCTAACCCTGTGTGCTGAGAGATGCGTCTGCGTTCAAACGCTGCAAGAGGCTGATGAAGTTAGCAATATTGTCCCATCTTTGGTCAGTTTAGGTCCTGTAAGTGAAGGGACAGCCTCTCCACACGCCAGGAGTTTCACAGCACGGGCTCTGTTGCTAGTTTAAAGGCATTTGATCAGGAGAGTCACATTAAATCAGGAATATACTGCTGTTTGGggtgggattttttttgttcatgtctAAAATGGGTATGTGGTcgttatttttatcatatacaGAGTGAGGTTTGATTGATGTCGAGAGTctttaattgtataaatatatttatggacGAGTCGGtaaatgtgatttgttttcGAGTAGCGCGACCTTAAGATGTGCGTTGAATACTGAATTAGGGTTTTAAGAATAATTAATAGTATGATTCATGACATGAAGACGAGAAAAAGTGAAAGGCTGAGAAGAATACGAATTTCAAGTGCAAGAACTGCCACACAAAATGAGGAGCGAGGCCAGTACAGCCATTTCATATCCtacatataaagtaaaatgaagTTTCTAATGCTTTACAGGTCTTTCAGTGTTTTATGGAACAGCCTGTGCCGTTCGGGCCAGctaactgtttatttttgttacttcatGAATACACAGTATGTTTGTATTGTGGATGCTTGAATTATAATTAAAGAATCGTCCAAGTTCCCTCCACACTGCATGATATACACCCTATTCATATGTATGTACTTAATTTGTCATTGTGGATACACCATTTGAATGTTGCATTAGTTTGTAGGAGTGAATTATGCTTTTTTGCAATACAGcttttgttaaacaaaacagGATATGATTTTAACGTCATTTCTGATGCGTCGTGTATTCcggttttatgtaaaaaatcaGGTTTTGTCTGGATATGTTTTGATGCACGTGTTACTTTTCCGTACCACGGTACAAATATTACACATGacaatgtttttgaacatttataaaGTTTGTGTAGCGCTGtcaaaaaggaataaattactgaaAAACCGTTA

Function

symbol description
srsf5b Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).
srsf5 Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within response to wounding. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of breast cancer; clear cell renal cell carcinoma; and colon adenocarcinoma.

NR:

description
splicing factor, arginine/serine-rich 5 isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204892 True 3304 TUCP 0.45 9 14993099 15015183
TU204893 False 3078 TUCP 0.44 9 14993099 15015183
XM_043219410.1 False 2046 mRNA 0.45 8 15009500 15015269

Neighbor

gene id symbol gene type direction distance location
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding downstream 8243 14976262 ~ 14984856 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding downstream 21809 14907899 ~ 14971290 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding downstream 89604 14846009 ~ 14903495 (-)
wdr21 dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145 coding downstream 179597 14808533 ~ 14813502 (-)
pigh pigh,LOC107739364,LOC107602101,LOC107668214,LOC107562701,LOC107721283,LOC107721262 coding downstream 193560 14797948 ~ 14799539 (-)
susd6 susd6,LOC107721312,LOC107756599,LOC107549087 coding upstream 568 15015837 ~ 15036887 (-)
thbs1b thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445 coding upstream 63705 15078974 ~ 15089573 (-)
chrm5b LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776 coding upstream 151137 15166406 ~ 15175414 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding upstream 170443 15185712 ~ 15252625 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding upstream 260838 15276107 ~ 15278071 (-)
LOC122324712 NA non-coding downstream 149363 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 199390 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 414198 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 468076 14524732 ~ 14525023 (-)
G138502 NA non-coding downstream 525685 14269723 ~ 14467414 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 308303 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 316532 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 355339 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 501574 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 668907 15684176 ~ 15711053 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 547174 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 794571 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1225275 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 1301092 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 1444508 13547276 ~ 13548591 (-)
LOC122325611 NA other upstream 827129 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 827629 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 828140 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 829085 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 974880 15990149 ~ 15993645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location