fndc1 (fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111)


Basic Information

Item Value
gene id fndc1
gene name fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16347201 ~ 16366799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU205229
TCCAGTATCCAGTACACGGCACATAAGAATAGGATCTGTTCCCACATCAGGCTCTTCACCGTCTTCAACACACTCCTCATCAacatcatcatcttcctcctctCAAAACAGTCCAGCAGAAACACCACTTATCTCAAATTCAGACATAGCAGACAGGAGTAATACTAATGCTAGGTTAAATCCAAGTTCAGTTTCTCGCTCTTCCCATGGGCTGTCAGCTGGTGAAAGCTCTAGTAGGAATACATCTCCTGAGTCTCGAAATCCAGTGATGGGATCGAGATTGCGGTCAATTTCAAAGGACAACACTCCAGCTAGTGGCTACAAACCTAGCTATGAAAAAGGCAAAAACGGACGGCCAAATCTCACAGCTGCAAATAGCAAAGCATCCTCAACATCTGATGAAAATTCAACACCAAATGGAGTCCGACATATCACAGGTCCTGATGGAACAAAATGGGTAGTAGATCTTGATAAGGGTGTCCTAATGAATGAAAACGGCAGAGTTCTTCAGGATTCAAGAGGAAGACCCAGAAAAGTTGTCCTTGGAGAGGATGGCAAGACTATTTT
>TU205232
GAATACATCCTTTCCTATGCTCCTGCTATGAAACCTTTTGGTGCAAAGTCAGTTACATACCGCGGCACCATCACCTCTGCTACCATAGATGGACTTACGCCAGGTGACCGCTATATCTTCAAAATTCGTGGAGTCAATAGGAAGGGCCAGGGACCACAGACTAAAGCCATTATTGTTGCAATGCCTGCATCCAGCTCTACTCACTTAAGGAACACAGACAGCCACAAGACAAGTTCCTTAAAGACATCTTCAAACAATGAATCAGACAATCAGGAGCCAGATGAGATGGAAGAGTCCGATACTCAGACCACAACTCAAGTGCCACCCACAAACCGACGAGGACGCCCTCTTTCTCAAACAAGGTCCTATCACAGCATCTTCTCCTCTGTGAGGGGTTCAGTCAGAAATGGAGGTTCTAGCTCAAGGTCAAACTCACATTCATCACCCACTAATGCCAAATATAGAGAGGGAGATACAAATGAGCCAACTGACAGTCCAACAGAAGAGGAAATAAGAGCAAATGAAGCTACTGAGGACACAAAACCAGAGAGCAGCAATAATGCAGCACC
>TU205233
CCTGAATCAGCTCCTTCTGGCCCTCCAGAAAATTTTCAAGTAAAACCACTTCGAGGAAAAGGTACTGCTGTCACAGCCACCTGGGATCCACCTGAGCAAACAAATGGCCGATTAAGGGAATACATCCTTTCCTATGCTCCTGCTATGAAACCTTTTGGTGCAAAGTCAGTTACATACCGCGGCACCATCACCTCTGCTACCATAGATGGACTTACGCCAGGTGACCGCTATATCTTCAAAATTCGTGGAGTCAATAGGAAGGGCCAGGGACCACAGACTAAAGCCATTATTGTTGCAATGCCTGCATCCAGCTCTACTCACTTAAGGAACACAGACAGCCACAAGACAAGTTCCTTAAAGACATCTTCAAACAATGAATCAGACAATCAGGAGCCAGATGAGATGGAAGAGTCCGATACTCAGACCACAACTCAAGTGCCACCCACAAACCGACGAGGACGCCCTCTTTCTCAAACAAGGTCCTATCACAGCATCTTCTCCTCTGTGAGGGGTTCAGTCAGAAATGGAGGTTCTAGCTCAAGGTCAAACTCACATTCATCACCCACTAATGCCAAATATAGAGAGGGAGATACAAATGAGCCAACTGACAGTCCAACAGAAGAGGAAATAAGAGCAAATGAAGCTACTGAGGACACAAAACCAGAGAGCAGCAATAATGCAGCACC
>XM_043220534.1
ATGGAGTGCATCTGTGTTCCAGAGAACCCTGAATCAGCTCCTTCTGGCCCTCCAGAAAATTTTCAAGTAAAACCACTTCGAGGAAAAGGTACTGCTGTCACAGCCACCTGGGATCCACCTGAGCAAACAAATGGCCGATTAAGGGAATACATCCTTTCCTATGCTCCTGCTATGAAACCTTTTGGTGCAAAGTCAGTTACATACCGCGGCACCATCACCTCTGCTACCATAGATGGACTTACGCCAGGTGACCGCTATATCTTCAAAATTCGTGGAGTCAATAGGAAGGGCCAGGGACCACAGACTAAAGCCATTATTGTTGCAATGCCTGCATCCAGCTCTACTCACTTAAGGAACACAGACAGCCACAAGACAAGTTCCTTAAAGACATCTTCAAACAATGAATCAGACAATCAGGAGCCAGATGAGATGGAAGAGTCCGATACTCAGACCACAACTCAAGTGCCACCCACAAACCGACGAGGACGCCCTCTTTCTCAAACAAGGTCCTATCACAGCATCTTCTCCTCTGTGAGGGGTTCAGTCAGAAATGGAGGTTCTAGCTCAAGGTCAAACTCACATTCATCACCCACTAATGCCAAATATAGAGAGGGAGATACAAATGAGCCAACTGACAGTCCAACAGAAGAGGAAATAAGAGCAAATGAAGCTACTGAGGACACAAAACCAGAGAGCAGCAATAATGCAGCACCACAAACAGAGGAACATTCAAAACACTCTCATGACACACCAAAGAATCAAAACTCCAGTCAGTCTGAATCTGTCAAAAGTCATCCTTGGACCCCAATCACATCCCCAATTATTGATATTAGCAGATTAAGAAGGCCTAATTCTCGATCAAGAATTCGGAGTGAAGCTTCTTCAAGTTCACAAAACCAGGAGTCTGCAGCTACAAGAAAGGACCTAACAGCGGTCTCCTATCCTGAGGAAAAGAACTCATACAACCAGAAAAGTGTCACTGACAGAACTCCTTCAGTGATCTCATCTCAGGAAACCAGGCCTGAATCAGTGAAAGAGTCAGAATCCCCCTCATCCTCATCTATCTCCTCTCCAACTtactcttcctcctcctcagcaTCAacttcatcatcttcttcttcagtATCTTCTCCTTCATCCTCTTTACCTTCATCATCAGCAGGTACAAGAAGGACTTCTTCCACGTCTGGTCGAGTCCCAAGTTCAGCATCTGGTGCCATGTATCCTAACGGAAGAAGAGTTGGAATTTCAACTAAAGCTCAGAGACTTCAAACAGGAAAGCACAAACCTGagtcatcgtcatcatcatcatcatcatcatcatcatcatcatcatcatcctcatcatcatcatcaaatgCTTCTTCACAATCAACACTGCCAATAGGAACTAGGACGAGCATTCACCATACAACagaggagaaaaacacagagctaGACAACACAAAAGGTGAACAACCAACTGAAGAAACCAAAAAAAAAAGCAATAGCTATGTTTCTACTTCCCATTCTTCTTCAAGGACTAACTCTTCTACAACAGGAAGAAGTTCACCGATTTCATTACCAAACCGAAATTCCAGGATAGTTACAGGAAATCGCAGACAAGATGGGAGAATACCATGGAGTAGGGCCGCCTCTTCTGTAGGTGCAGGAAGGCCAATTATTAAAGGATTTCCATCTCGTTCTACTTCTGTGAGCTCTCAAGGTACTAGTGATAAAATCCCCACAACATACCCTTCAAAGCATGAGGCTAATCCTGTGTCAAAACCTAGTGTGCTAAACAAAGACACAAATGCTCCAATAAGTTCCAACAATCCCAGTAATAATGAAGATGTTAAAATTAGCAATGATCATGAAGATGATTATATTTGAGGAAACAGAGCGACCTTGGAGAGGCAAAGCAAAGATGCCACCTCAACTGCTGCACCTAAAACCACAACAACAGCCGTAAGCGAAATTCACAGACCTGGCCAGAAtattgaaaatgaaagtgtgaATAGAAAACAAAGTAGCACCAGTAGCAATTCAAAGTCAATTCCTTCAGGTGCCCAAAGATTGCCTATTTTGGCTTCTAATGGTCGGGTTCGCTCTCCTGTGGTAGCAAGCCGTCTGAAAGGTTCACGGCTCCCTAGTAGTAGGGTGTATCCAGTATCCAGTACACGGCACATAAGAATAGGATCTGTTCCCACATCAGGCTCTTCACCGTCTTCAACACACTCCTCATCAacatcatcatcttcctcctctCAAAACAGTCCAGCAGAAACACCACTTATCTCAAATTCAGACATAGCAGACAGGAGTAATACTAATGCTAGGTTAAATCCAAGTTCAGTTTCTCGCTCTTCCCATGGGCTGTCAGCTGGTGAAAGCTCTAGTAGGAATACATCTCCTGAGTCTCGAAATCCAGTGATGGGATCGAGATTGCGGTCAATTTCAAAGGACAACACTCCAGCTAGTGGCTACAAACCTAGCTATGAAAAAGGCAAAAACGGACGGCCAAATCTCACAGCTGCAAATAGCAAAGCATCCTCAACATCTGATGAAAATTCAACACCAAATGGAGTCCGACATATCACAGGTCCTGATGGAACAAAATGGGTGTTAGATCTTGATAAGGGTGTCCTAATGAATGAAAACGGCAGAGTTCTTCAGGATTCAAGAGGAAGACCCAGAAAAGTTGTCCTTGGAGAGGATGGCAAGACTATATTAGATGATCAGGGCAGCCCACTGGTAAACCAGGAAGGATTAGCATTATTTGGTCATGGAAGAGACAGTCGGCCTGTGGTTAATCCTAGTGACAAATACCTTACTGTGGGAGGAAAACCCATCATTGGCTTGGACCGCCCTAAACCAAGGATTACAACCACGACTACAACAACCACTACAATCGAAACTACAACAACACCAGAACCTACTACAACAGAATTGGTAACAGAAACATTGGAGCAGTCAACATTAGCGGCTGAGCCTACATGTCCACCTGGACTTTATTCTCGACTGGATCAGAATGGTTTCCCAGTATTGGATGCTGATGGAATACTTAACTGCTACTCTGAAGATACTCTTTTTGAGGAGACTACCACAACCCCAGTTCCACTTCCTACCACAACGCTGGCTCACACAACAGAGACTCCTACAACACAGCCTCTAACTCCTGAGACACGGCCTTTGAACAACACTCCTTCTTCTGAGTTTGATGTGGCCGGAAAGAAACGGTTCACAGCTCCATATGTAAACTACATCCGTAAGGATCCTGGAGCTCCCTGCTCCCTGACCGAGGCTCTGGAGTACCTTCAAGTAGATGTCTTAGCAGACTTGATGGAGAAGGAACAGCAATCAGTCAATCAAAAGCAGCCACCCAAAAACAAGCCTCATAATGTCACTGTGGTTGCTATGGAGGGCTGTCACTCCTTTGTGATTTTGGACTGGGCACTTCCACTGAAAGATGACATGGTGtctgGCTATATGGTACACAGCGCGTCCTATGACGATGTCCTAAATAACAGATGGTCAACCAGATCCTCAAGTGGAACCCACCTCCCTGTTGAAAATCTCAAGCCCAATTCCAGGTATTACTTCAAAGTTCAAGCAAAGAATATCTTTGGACTGGGGCCACTGAGTGAAACTTTAACATACGTTACAGAATCAGatgatcCCCTGCTCATAGAGAGACCCCCAGGTGGGGAGCCCATCTGGATCCCATTCTCGTTCAGGTATAACACCGCCCACAGTTCTTGTAAAGGAAGTCAGTTTGTCAAGCGCACCTGGTATAGGAAGTTTGTCGGCGTCGTCCTCTGCAACTCGCTACGCTATAAAATCTTCATGGGAGATGGACTGAGAGAGCCGTTCTACAGCGTTGCTGATACATTTGGCCACGGAGAGGACCACTGCCAGTTTGTGGACTCTTATCTAGATGGAAGGACAGGACCACACAATCTCTCCCTCAGCCTACCCACAGCTCAAGGATATTATCGGTCATATAGGCAAGAGCCGGTGAATTTCGGTGCCATCGGAAGGCGCACACCACATCCTTTCGTTGGCTGGTATGAATGTGGAGTTCCAATCCCTGGAAAGTGGTAACAGGGGGGAAACTCCAAGAGGACATTTCCACAGGCAATTACATTCCACGTGTTCTGTCCCTGTATCTATAAGCCAATCACAGAGGTGAACCATTGTTCACCA

Function

symbol description
fndc1 Orthologous to human FNDC1 (fibronectin type III domain containing 1).

NR:

description
PREDICTED: fibronectin type III domain-containing protein 1

GO: NA

KEGG:

id description
K24484 FNDC1; fibronectin type III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU205229 False 567 TUCP 0.44 3 16362131 16363312
TU205232 False 569 TUCP 0.46 2 16364810 16365467
TU205233 False 686 TUCP 0.47 4 16364810 16366772
XM_043220534.1 True 4185 mRNA 0.45 18 16347201 16366799

Neighbor

gene id symbol gene type direction distance location
LOC122324754 wtap,LOC107732643,LOC107549122,LOC107693220,LOC107696108,LOC107726473,LOC107601562 coding downstream 25782 16315018 ~ 16321419 (-)
acat2 acat2,LOC107696107,LOC107732634,LOC107549121,LOC107693222,LOC107726488,LOC107601581 coding downstream 32478 16310886 ~ 16314723 (-)
kif25 kif25,LOC107726448,LOC107549120,LOC107696106,LOC107732626 coding downstream 36634 16302191 ~ 16310567 (-)
hebp2 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding downstream 45157 16299274 ~ 16302044 (-)
LOC122324509 ephx1,LOC107553477,LOC107732537,LOC107601524 coding downstream 228757 16113092 ~ 16118444 (-)
hpcal1 hpcal1,LOC107549126,LOC107696114,LOC107726415,LOC108411356,LOC105909572,LOC107601527,LOC101077504 coding upstream 68422 16435221 ~ 16443831 (-)
usta ust,LOC107732646,LOC107696116,LOC107726493,LOC107693205,LOC107601503 coding upstream 108552 16475351 ~ 16519770 (-)
sash1a sash1,sash1a,LOC107732642,LOC107693212,LOC107696119,LOC107601490 coding upstream 153644 16520443 ~ 16690139 (-)
stxbp5a stxbp5a,LOC107679494,LOC107696120,LOC107710208,LOC107726399,LOC108436475 coding upstream 324508 16691307 ~ 16760481 (-)
adgb adgb,LOC107726608,LOC107601183 coding upstream 398916 16765715 ~ 16798477 (-)
G138983 NA non-coding downstream 21448 16323406 ~ 16325753 (-)
G138960 NA non-coding downstream 130485 16214344 ~ 16216716 (-)
G138956 NA non-coding downstream 139200 16207070 ~ 16208001 (-)
G138922 NA non-coding downstream 156542 15816920 ~ 16190659 (-)
LOC122325612 NA non-coding downstream 622971 15724010 ~ 15724230 (-)
G139029 apobb.1,LOC107693214 non-coding upstream 83727 16450526 ~ 16451893 (-)
G139032 NA non-coding upstream 88085 16454884 ~ 16455403 (-)
G139139 NA non-coding upstream 476419 16843218 ~ 16845168 (-)
G139145 NA non-coding upstream 483755 16850554 ~ 16946540 (-)
G139147 sesn1,LOC107601204,LOC107679493,LOC107601436,LOC107696127,LOC107726620 non-coding upstream 492544 16859343 ~ 16860256 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 242474 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 353556 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 502627 15844354 ~ 15844574 (-)
LOC122325622 NA other downstream 503572 15843409 ~ 15843629 (-)
LOC122325617 NA other downstream 504083 15842898 ~ 15843118 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other upstream 88669 16455468 ~ 16462216 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 980007 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 1434603 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 1976664 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 2039228 18406027 ~ 18446949 (-)

Expression


Co-expression Network