G139029 (apobb.1,LOC107693214)


Basic Information

Item Value
gene id G139029
gene name apobb.1,LOC107693214
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16450526 ~ 16451893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU205285
ATGACTACTGTTGAGCTGTGCCTGTTTTCTCACCTCCTGACAGCATTGCTGAGAGCATAGTAGATGGGCTTGCTGTTCTTGTACTTCGCCATCTTCAACATTTCTTCAACAAGGTCTCTAGATGGGTTGGGAACCATTCCCATGGCATACACTGCAGCATCGATCTCTAAAGAGGAACGGTCAAAGGTTCTGAGAACCTGCAAGATGGAGCTGGTGCATTCTGGCGTGCCACACTGGAACAACGTCTGGTACACCAGGGGACGAGAAATCTCCAGGGCCTCTGGTAGAGCAGCATTCAGGCTTTCAGTATTCATTTTGCGGATTGTAGAGATGAGCTTATGAGCTAGGTGGGCTCTGTTGTGTCCATTGTTGGTCTCAGAAAGTCCGGCCAGTTCTCTTAGAACAGACAGCATTACCTCTTTATCCTTAATTGGATGGACTGAGTCAATGCTTCCATCAAGGTGCAGGGTCTTTATGTTGGCTACATCTAGAGGTGGGTAAACAAGAAAATGGCACtagtaaaaacacaattactgcaaatacatgtaaatttaAGTGTCTGAATGACTTCTTACTGTGCTCAAAGATTCTGTCATTGTGTACAGATACTTCCACCAGAGTCAAGATTTGTTTTCCTGTGTTAGTAACTCCATACTGTCCcctgtttataataaaaagtaagcAGATCAATAAACAAAACAGTCTGTCTAAAGTAAAAACCTATGTGGCTGACAATGAACTCACTTGTAAGAAAACGGCACAAGCATGTGGTTTTCAGTGCAGGAAGCAGAGGTCATATGTTTCTGAGCGTTATCAAACTTGTAGTTGCAGGTTTGGCTGCTTGTGATGAGTTGAGCAAGTGGGTAGTGCTCATTCTCCTGTTTCTGTCCTCCTCCAGCACAGGCACTGCTAGGGCAGAAATTAGACCTCTCTTGATGTTCAGAATATTGACTGGTTCATCATCCTCAGGAAACAATTTGATGTCATCGTCTCCCTCAGCAGTGAACTTCAGTGGGTTC

Function

symbol description
apobb.1 Predicted to enable cholesterol transfer activity and low-density lipoprotein particle receptor binding activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be part of low-density lipoprotein particle; mature chylomicron; and very-low-density lipoprotein particle. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); biliary tract cancer (multiple); familial hyperlipidemia (multiple); hypobetalipoproteinemia (multiple); and sickle cell anemia. Orthologous to human APOB (apolipoprotein B).

NR:

description
PREDICTED: apolipoprotein B-100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205285 True 1019 lncRNA 0.44 2 16450526 16451893

Neighbor

gene id symbol gene type direction distance location
hpcal1 hpcal1,LOC107549126,LOC107696114,LOC107726415,LOC108411356,LOC105909572,LOC107601527,LOC101077504 coding downstream 6695 16435221 ~ 16443831 (-)
LOC122324754 wtap,LOC107732643,LOC107549122,LOC107693220,LOC107696108,LOC107726473,LOC107601562 coding downstream 129107 16315018 ~ 16321419 (-)
acat2 acat2,LOC107696107,LOC107732634,LOC107549121,LOC107693222,LOC107726488,LOC107601581 coding downstream 135803 16310886 ~ 16314723 (-)
kif25 kif25,LOC107726448,LOC107549120,LOC107696106,LOC107732626 coding downstream 139959 16302191 ~ 16310567 (-)
hebp2 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding downstream 148482 16299274 ~ 16302044 (-)
usta ust,LOC107732646,LOC107696116,LOC107726493,LOC107693205,LOC107601503 coding upstream 23458 16475351 ~ 16519770 (-)
sash1a sash1,sash1a,LOC107732642,LOC107693212,LOC107696119,LOC107601490 coding upstream 68550 16520443 ~ 16690139 (-)
stxbp5a stxbp5a,LOC107679494,LOC107696120,LOC107710208,LOC107726399,LOC108436475 coding upstream 239414 16691307 ~ 16760481 (-)
adgb adgb,LOC107726608,LOC107601183 coding upstream 313822 16765715 ~ 16798477 (-)
rab32a rab32,rab32a,LOC107679502,LOC107601480,LOC107696121,LOC107726484 coding upstream 347867 16799760 ~ 16814144 (-)
G138983 NA non-coding downstream 124773 16323406 ~ 16325753 (-)
G138960 NA non-coding downstream 233810 16214344 ~ 16216716 (-)
G138956 NA non-coding downstream 242525 16207070 ~ 16208001 (-)
G138922 NA non-coding downstream 259867 15816920 ~ 16190659 (-)
LOC122325612 NA non-coding downstream 726296 15724010 ~ 15724230 (-)
G139032 NA non-coding upstream 2991 16454884 ~ 16455403 (-)
G139139 NA non-coding upstream 391325 16843218 ~ 16845168 (-)
G139145 NA non-coding upstream 398661 16850554 ~ 16946540 (-)
G139147 sesn1,LOC107601204,LOC107679493,LOC107601436,LOC107696127,LOC107726620 non-coding upstream 407450 16859343 ~ 16860256 (-)
G139149 NA non-coding upstream 408433 16860326 ~ 16896383 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 83727 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 345799 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 456881 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 605952 15844354 ~ 15844574 (-)
LOC122325622 NA other downstream 606897 15843409 ~ 15843629 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other upstream 3575 16455468 ~ 16462216 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 894913 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 1349509 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 1891570 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 1954134 18406027 ~ 18446949 (-)

Expression


Co-expression Network