G139069 (stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120)


Basic Information

Item Value
gene id G139069
gene name stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16698307 ~ 16700980 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU205347
GCTATCTTACCACAAGGGGAGACAATGACTGGCTGCAGAAGCCTCTGCTCTCCAGCAGGGGGCATGTTGAGGGAGATTGCCAAGACTGTGCCCAAGGACGTGCCAACCCACAGACTAGGTGTAAGCCCGCCATCTGCTTTACGGTTGTACGTCTCACAGAAATAGAAAGATGTGATGGCCTCTCGTGCTTCCTTGTCAATACTGGTCACGCTGGAGCTCCGTGAGCGGCTGAAGGAGTTGTCCCTGTTGTCTAGGGGTATGGAACCCCGCGGGGGACATACAGAGAGTAGGACCAAGTCTGGCTTTAGCTCAGTAGGCAAGCTTAATTTCCGTGACATCTTTGCTGGAAAAAAGAGAACACCTCTCTTTACAAACACATTGAAGCCTCAGTAAAAGCCATGCAATGCTTGAACTAGTTGTGCTCGAGAAAACACCAAGACAACATAGCTAAAGGGTTTTTTAATCATCCTGAGGGACACAAATGCTTCAAACAGGACAAAGGGGACACTGCAATATTTTTCAGCGAGTCAGAGACAAACTGCATAATGCTGCATGCTGGACAAACAGTACTGGGATGTAAATGGGTGTAATTTGGCCACACAAAGCCCTGAAAGGAAAAGAATTAACATCAGAACAGACAAAACAATCATTCTCAGCACCCCATGCCACAAGCATGCACCACACAGGAGAATACAAACTAGACATTATGGCTTATATGGATgagtttgtacattttctataaTATGTATACCCTCGCCGCATAAGCATATGTTGGCTTCATAAATTAtctttcataaataaataaatagctggCAGATGAACATGTAACCTTGCTTTGTgagcaaaaatatctaaacattcttaaGACAAGATACATTCACTTGGGAAACAAAATTGCAGAAGATGCTATACTGTTATTACTATTTCCCAATGTacattacagttttatattgattgatttatttgttaatgcatttatattagatttattagAATGTTTATGGCCAGTGattgacagaaaaaaagttatattaaataaatatataattatatttaataaatatataatttatttaagttttaatatcgTAATACCTACAGTTTCgcttctcaaataaatgcattgtc

Function

symbol description
stxbp5a Predicted to enable GTPase activator activity; myosin II binding activity; and syntaxin binding activity. Predicted to be involved in regulation of exocytosis and regulation of protein secretion. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human STXBP5 (syntaxin binding protein 5).

NR:

description
PREDICTED: syntaxin-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205347 True 1128 lncRNA 0.39 2 16698307 16700980
Loading

Neighbor

gene id symbol gene type direction distance location
slc22a16 slc22a16,LOC107693213,LOC107602826,LOC107601215,LOC107726421,LOC107696098,LOC107732637 coding upstream 222302 16465966 ~ 16476005 (+)
apobb.1 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107696115,LOC107601514 coding upstream 234344 16449276 ~ 16463963 (+)
pdia6 LOC107732640,LOC107693218,LOC107549125,LOC107726466,LOC107601540,LOC107696113 coding upstream 263126 16429619 ~ 16435181 (+)
otofa otofa,LOC107696112,LOC107726465 coding upstream 270876 16380751 ~ 16427431 (+)
sod2 LOC107732630,LOC107726487,LOC107693221 coding upstream 372554 16322481 ~ 16325753 (+)
cd164 NA coding downstream 142227 16843207 ~ 16853940 (+)
sesn1 sesn1,LOC107601204,LOC107679493,LOC107726620,LOC107601436,LOC107696127,LOC107726430 coding downstream 158304 16859284 ~ 16895444 (+)
snx3 snx3,LOC107726634,LOC107696129,LOC107679498,LOC107726474 coding downstream 269693 16970673 ~ 16982928 (+)
ostm1 LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130 coding downstream 303615 17004595 ~ 17009548 (+)
si:ch73-257c13.2 LOC107726613,LOC107679487,LOC107601189 coding downstream 311216 17012196 ~ 17014226 (+)
G139036 NA non-coding upstream 219918 16477856 ~ 16478389 (+)
G138973 NA non-coding upstream 383547 16313711 ~ 16314760 (+)
G138961 NA non-coding upstream 479937 16218168 ~ 16218370 (+)
G138878 NA non-coding upstream 704844 15992311 ~ 15993463 (+)
G138870 LOC107549110,LOC107721378,LOC107601728,LOC107668221,LOC107726467 non-coding upstream 849283 15727221 ~ 15849024 (+)
G139081 NA non-coding downstream 58975 16759955 ~ 16760526 (+)
LOC122324686 NA non-coding downstream 210967 16911947 ~ 16944872 (+)
G139134 NA non-coding downstream 282076 16983056 ~ 16983992 (+)
LOC122324442 NA non-coding downstream 290672 16991652 ~ 17001125 (+)
G139188 nbas,LOC107602494 non-coding downstream 451264 17152244 ~ 17153246 (+)
LOC122325444 rps7,LOC107668222 other upstream 776027 15721861 ~ 15922280 (+)
G138869 LOC107732629,LOC107726464,LOC107693230,LOC107549112,LOC107601686 other upstream 901279 15763114 ~ 15797028 (+)
aven aven,LOC107549092,LOC107756595,LOC107671777,LOC107601941 other upstream 1508088 15169355 ~ 15190219 (+)
slc10a1 slc10a1,LOC107668231,LOC107671779,LOC107756602,LOC107721315 other upstream 1682935 15003410 ~ 15015372 (+)
LOC122324585 kif26aa,LOC107721264,LOC107602192,LOC107711661,LOC107668200,LOC107569886,LOC107659150 other upstream 2427969 14210022 ~ 14270338 (+)
henmt1 henmt1,LOC107710559,LOC107698398,LOC107555628,LOC107601273,LOC107726462 other downstream 795915 17496895 ~ 17502015 (+)
ivns1abpa ivns1abpa,LOC107732388,LOC107726450,LOC107553504,LOC107599089,LOC107696153 other downstream 1088314 17789294 ~ 17802450 (+)
il17a/f3 stmn4,LOC107698329,LOC107553446,LOC107732387,LOC107719388,LOC103148820,LOC106907996,LOC106571034,LOC106608277 other downstream 1328150 18029130 ~ 18034178 (+)
cnih3 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC108440801,LOC108248696,LOC106527994,LOC106571455,LOC107095392 other downstream 1907532 18608512 ~ 18634663 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 2057649 18758629 ~ 18760209 (+)

Expression

G139069(stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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G139069(stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120) Expression in each Bioproject

Bar chart with 2 bars.
G139069(stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G706683 stxbp5 unknown NC_048572.1 CM023226.2 39219644 ~ 39226313 (-)