G139148 (sesn1,LOC107726430,LOC107601436)


Basic Information

Item Value
gene id G139148
gene name sesn1,LOC107726430,LOC107601436
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16889939 ~ 16891460 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU205449
CATTATCCCTATGTAATGTCTGCAGTGCAGAGACAATGGGCCGTCCATCTGAAGCAGGTAATGCTGTGTCTTAAGAAAGCTCTCCAGATACTGAGGATGGAACCCCATCACGAAGGAGATGTTGTCAAGACGACCGAGCATTGCAAAGGCGTCCTCAAAAATCGACTGTATTCTTTCATCCAATTTACTGAATTGAAGTATCTGTTTCCATAGTTTCATTAGATGCCGATGCGTGCCTCATATTGCGCTGTTCTGCTTCTGAATAAAAAATTTGAGCGACTAtctaatttttgttttagctcCCGTTGTTCCTTGAGGCATTTGGTTACGCTACCCGTTCATATCAGCTGTTGAAGCTCCCGAG

Function

symbol description
sesn1 Predicted to enable leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Acts upstream of or within determination of left/right symmetry. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including anterior axial hypoblast; central nervous system; mesoderm; presumptive paraxial mesoderm; and pronephros. Orthologous to human SESN1 (sestrin 1).

NR:

description
sestrin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205449 True 364 lncRNA 0.44 2 16889939 16891460

Neighbor

gene id symbol gene type direction distance location
cep57l1 LOC107679495,LOC107726623,LOC107601208,LOC107696099,LOC107726414 coding downstream 31329 16855295 ~ 16858610 (-)
grm1a grm1,grm1a,LOC107679500,LOC107696122,LOC107726479 coding downstream 49877 16814705 ~ 16840062 (-)
rab32a rab32,rab32a,LOC107679502,LOC107601480,LOC107696121,LOC107726484 coding downstream 75795 16799760 ~ 16814144 (-)
adgb adgb,LOC107726608,LOC107601183 coding downstream 91462 16765715 ~ 16798477 (-)
stxbp5a stxbp5a,LOC107679494,LOC107696120,LOC107710208,LOC107726399,LOC108436475 coding downstream 129458 16691307 ~ 16760481 (-)
armc2 armc2,LOC107679492,LOC107601205,LOC107696124,LOC107726616,LOC107726428,LOC107601411 coding upstream 5101 16896561 ~ 16911932 (-)
foxo3b foxo3b,LOC107679488,LOC107601202,LOC107726619,LOC107601425,LOC107726429,LOC107696126 coding upstream 30178 16921638 ~ 16947178 (-)
afg1lb lace1b,LOC107679503,LOC107726636,LOC107601203,LOC107726402 coding upstream 57969 16949429 ~ 16970041 (-)
nr2e1 nr2e1,LOC107602776,LOC107726424,LOC107726614,LOC107601200 coding upstream 92884 16984344 ~ 16991803 (-)
nbas nbas,LOC107602494,LOC108439588 coding upstream 260883 17152343 ~ 17286892 (-)
G139147 sesn1,LOC107601204,LOC107679493,LOC107601436,LOC107696127,LOC107726620 non-coding downstream 29683 16859343 ~ 16860256 (-)
G139139 NA non-coding downstream 44771 16843218 ~ 16845168 (-)
G139032 NA non-coding downstream 434536 16454884 ~ 16455403 (-)
G139029 apobb.1,LOC107693214 non-coding downstream 438046 16450526 ~ 16451893 (-)
G138983 NA non-coding downstream 564186 16323406 ~ 16325753 (-)
LOC122325296 NA non-coding upstream 152187 17043647 ~ 17116946 (-)
G139300 NA non-coding upstream 232426 17123886 ~ 17124259 (-)
G139301 NA non-coding upstream 233363 17124823 ~ 17125248 (-)
G139302 NA non-coding upstream 233977 17125437 ~ 17125910 (-)
G139317 NA non-coding upstream 444547 17336007 ~ 17336320 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 427723 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 523140 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 785212 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 896294 15990149 ~ 15993645 (-)
LOC122325613 NA other downstream 1045365 15844354 ~ 15844574 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other upstream 455346 17346806 ~ 17428123 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 909942 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 1452003 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 1514567 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 2363274 19254734 ~ 19256272 (-)

Expression


Co-expression Network