LOC122324448


Basic Information

Item Value
gene id LOC122324448
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17893736 ~ 17907615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU206190
GCCTGAGGTGATGGGGCTGGGGGTGGGGCGAACGGGTCACAGCCTACGCACATCTGGAAGCACTTCAGGTCAGCAGGGCCCGGCTGCCTGAAAGaggaCACATCAGAGGTTTGAAGAATGAGCAGACGCGCTTGTGAAACATGGCTGGAGACAGAGCGGGAAGCCCAGATCTCGAAGCCTTGGCTGCAGCACCAGGCCTGGTGGAGGCACAGTGTCCGGTTACGCAGCGCCTGAGGAATGAGCTCAAAGTCTCTTTTATCAAAGCATTTCTGTATTGCTCCCTTTCTGGGACACATTAATTGCAGATGTGTTTGTTCTATTTCTTTCCTTTCGTTCTCCCCTTCCTTCTCTTGATCTATAAACGGGAATAATCCCCATCTTTCTACAAAAACAGTCTCATTACAGGAGAATGTGGAGACTGGCTGTGGCCTACAGCATGTGTGCTCAGAGGCAGAGTGATCGGCT
>XR_006247178.1
TGAGGACCCGCGGACATACCTTTCAGCATCTCTCTGGAATCGCTGAACAGACGGTGTCCAGTCCATGTTATTCGTCCATCTCTTAAGCGCCTCCTTGGATATCCACAGTAACGCGTGGGAGCGCCGTCAAATTAAGGCTCCAGATGTGGTGCTGAGGGGGTGAGGTGTTTGTATGTCATCTGCTCGGGCGGCTACGCGTACACCCATCCAAGGGGGATGCTGTCAGCCCTGATGGAGGAGGCCCGGGCCCCAGGCCTGAGGTGATGGGGCTGGGGGTGGGGCGAACGGGTCACAGCCTACGCACATCTGGAAGCACTTCAGGTCAGCAGGGCCCGGCTGCCTGAAAGaggaCACATCAGAGGTTTGAAGAATGAGCAGACGCGCTTGTGAAACATGGCTGGAGACAGAGCGGGAAGCCCAGATCTCGAAGCCTTGGCTGCAGCACCAGGCCTGGTGGAGGCACAGTGTCCGGTTACGCAGCGCCTGAGGAATGAGCTCAAAGTCTCTTTTATCAAAGCATTTCTGTATTGCTCCCTTTCTGGGACACATTAATTGCAGATGTGTTTGTTCTATTTCTTTCCTTTCGTTCTCCCCTTCCTTCTCTTGATCTATAAACGGGAATAATCCCCATCTTTCTACAAAAACAGTCTCATTACAGGAGAATGTGGAGACTGGCTGTGGCCTACAGCATGTGTGCTCAGAGGCAGAGTGATCGGCTGGGGATTTTTAAACAATCATGCTGAACTCTGACGATGAGGCCGATGACAACACCAAGCTTCAGTGTTACCGTCACGTACATCTGTAACCGAATCTTTGCAGAAACCTTGAATTAGGCAAGTGGTTAAACCTTCTATtgattttggtcatttttatttctaagcGTATTTTAGTTTTGAGGTATTATGCATAAAGCTTCGAGACGTTTTGTAATAAATTCTTGAAATTGATGCATTCTCCAGTCAACTGGTAAACTGAAGACCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206190 False 465 lncRNA 0.52 2 17894002 17898622
XR_006247178.1 True 984 lncRNA 0.50 3 17893736 17907615

Neighbor

gene id symbol gene type direction distance location
kifap3a kifap3a,kifap3,LOC107726482,LOC107696146,LOC107698375,LOC107732413,LOC107553501,LOC107599114 coding downstream 32705 17843539 ~ 17861031 (-)
hmcn1 hmcn1,LOC107732365,LOC107698379,LOC107726475,LOC107696172,LOC107553432 coding downstream 120995 17704918 ~ 17772741 (-)
ptgs2b ptgs2b,LOC107732418,LOC107698381,LOC107553505,LOC107599092,LOC107726413,LOC107696154 coding downstream 210781 17679203 ~ 17682955 (-)
pdcb pdcb,LOC107553506,LOC107698383,LOC107732392,LOC107726497,LOC107696164,LOC107599093 coding downstream 227370 17663502 ~ 17666366 (-)
tprb LOC107732389,LOC107553507,LOC107696139,LOC107599094 coding downstream 231672 17644978 ~ 17662064 (-)
slc25a24 slc25a24,LOC107553450,LOC107732372,LOC107698372,LOC107726490,LOC107696157,LOC107599083 coding upstream 59481 17967096 ~ 17975299 (-)
si:ch211-63o20.7 si:ch211-63o20.7,LOC107732427,LOC107726431,LOC107698369,LOC107599081,LOC108439852 coding upstream 81697 17989312 ~ 17995262 (-)
znf395b LOC107698366,LOC107553496,LOC107732419,LOC107696161 coding upstream 100331 18007946 ~ 18013527 (-)
LOC122325023 LOC107553448,LOC107732384,LOC107726442,LOC107599077,LOC107696167 coding upstream 106837 18014452 ~ 18017360 (-)
paqr8 paqr8,LOC107698331,LOC107732380,LOC107553447 coding upstream 110604 18018219 ~ 18021576 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding downstream 93870 17795484 ~ 17799866 (-)
G139565 NA non-coding downstream 99664 17789198 ~ 17794072 (-)
G139387 NA non-coding downstream 277228 17615793 ~ 17616508 (-)
G139386 NA non-coding downstream 278037 17615148 ~ 17615699 (-)
LOC122324574 NA non-coding downstream 334266 17555855 ~ 17559470 (-)
G139591 NA non-coding upstream 179597 18087212 ~ 18107403 (-)
G139651 LOC107696185,LOC107553490,LOC107698357,LOC107719095 non-coding upstream 249186 18156801 ~ 18157647 (-)
G139653 NA non-coding upstream 258511 18166126 ~ 18166731 (-)
G139681 NA non-coding upstream 348243 18255858 ~ 18313605 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding upstream 431659 18339274 ~ 18339510 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 69535 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 465613 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1431520 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1526937 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1789009 16017318 ~ 16104727 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 435848 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 498412 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1347119 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1353851 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 1390619 19298234 ~ 19303968 (-)

Expression


Co-expression Network