srp9 (srp9,LOC107553440,LOC107601484)


Basic Information

Item Value
gene id srp9
gene name srp9,LOC107553440,LOC107601484
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18758629 ~ 18760209 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU206468
CTGGGTTTTGCTTCAAACAGCTGTATTTTGCTACGccgctaaaatatttaataaaatacgaTATAATTAGTGTTTATTACACCATGCCTTATTACCAGACTTGGGAAGAGTTTGCGCGAGCTGCAGAAAAACTTTATTTGACGGATCCGATGAAGGTCAGAGTGGTTCTGAAATATCGACACTGTGATGGAAATCTCTGTATGAAAGTCACAGATGATGCTGTGtgtctgCAGTACAAAACCGACCAGGCCCAAGATGTAAAGAAGATCGAAAAGCTGCATGGGAAGTTAATGAGATTAATGGTCTCCAAAGAGTCCCACAGTCTAGCCATGGAAACGGACTGAATGAATCGAAGGAGCTGTTAGGATCGGACAGTTGTTTGTTACTCAAACTGACTAACAATTAAGAGTTATGGATCTACAGCAGGATGAAGATGAAGTTTGGTCGGTGTTTGTTGACTGTATGTTGAGAATGTCCGCTATCGTGCTCATTTGGAGAGCGAGCTGCAAGAGCATCCCACAAGAGGCTGGTTTTTGTGTTCCTGTTTGGAGGTCGGACAGCATTTGGTCTGCCTGTTATTTAACGTTTGAagaaagtatgttttaaatgcagcaaAGTCAagggaatacattttaaagcaggACCTCTTTGATTTCCTATTACAGTTAAATCTCAGCCCTGACTTTTGTATGTCTATGCATGATGTacaattaacatgaataaatgttatttttcttcatatttcacTTTACTTTTAACGAGTATTGCTGCGAGCGTTTAACGAATGCcgtttaaaaagccattttttctGTTCCTCTGAGTTTTTCGGTATTTGACGATACACTTCTGTCTGAAACGCAAGATGAAGATGGATACTTTTGGAGTGAATGAGTATTTTCAGTTGGATTACACCTGACAAGCTAGTTTTTTAAAGTTGTGATCTGGTTATTGATGCTTTAGTTCTGTATCTATTAAAATGTCTGCGGTTGATGGATGCAATCTGCATAGGGCTTACCTGCTTAGGATGACCCAGCTTCTGTCATGTTTCTGCGGACAAACCCTAACCCCcttcaaaaaagaaacaaaaatcattGTCACCATGTACATACGCAATATGTTAGTTTAATGTGAGATATAATTGTCTTACCTCAGAAAGCCCgcttgctgtatttttttttaccgtgtTCAAAGCTCCAATAAAT
>XM_043219451.1
AAGGTGGCCATATTTTATGCCACCTGGGTTTTGCTTCAAACAGCTGTATTTTGCTACGccgctaaaatatttaataaaatacgaTATAATTAGTGTTTATTACACCATGCCTTATTACCAGACTTGGGAAGAGTTTGCGCGAGCTGCAGAAAAACTTTATTTGACGGATCCGATGAAGGTCAGAGTGGTTCTGAAATATCGACACTGTGATGGAAATCTCTGTATGAAAGTCACAGATGATGCTGTGtgtctgCAGTACAAAACCGACCAGGCCCAAGATGTAAAGAAGATCGAAAAGCTGCATGGGAAGTTAATGAGATTAATGGTCTCCAAAGAGTCCCACAGTCTAGCCATGGAAACGGACTGAATGAATCGAAGGAGCTGTTAGGATCGGACAGTTGTTTGTTACTCAAACTGACTAACAATTAAGAGTTATGGATCTACAGCAGGATGAAGATGAAGTTTGGTCGGTGTTTGTTGACTGTATGTTGAGAATGTCCGCTATCGTGCTCATTTGGAGAGCGAGCTGCAAGAGCATCCCACAAGAGGCTGGTTTTTGTGTTCCTGTTTGGAGGTCGGACAGCATTTGGTCTGCCTGTTATTTAACGTTTGAagaaagtatgttttaaatgcagcaaAGTCAagggaatacattttaaagcaggACCTCTTTGATTTCCTATTACAGTTAAATCTCAGCCCTGACTTTTGTATGTCTATGCATGATGTacaattaacatgaataaatgttatttttcttcatatttcacTTTACTTTTAACGAGTATTGCTGCGAGCGTTTAACGAATGCcgtttaaaaagccattttttctGTTCCTCTGAGTTTTTCGGTATTTGACGATACACTTCTGTCTGAAACGCAAGATGAAGATGGATACTTTTGGAGTGAATGAGTATTTTCAGTTGGATTACACCTGACAAGCTAGTTTTTTAAAGTTGTGATCTGGTTATTGATGCTTTAGTTCTGTATCTATTAAAATGTCTGCGGTTGATGGATGCAATCTGCATAGGGCTTACCTGCTTAGGATGACCCAGCTTCTGTCATGTTTCTGCGGACAAACCCTAACCCCcttcaaaaaagaaacaaaaatcattGTCACCATGTACATACGCAATATGTTAGTTTAATGTGAGATATAATTGTCTTACCTCAGAAAGCCCgcttgctgtatttttttttaccgtgtTCAAAGCTCCAATAAATGTTCATAAAGTTGA

Function

symbol description
srp9 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to act upstream of or within negative regulation of translational elongation. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP9 (signal recognition particle 9).

NR:

description
signal recognition particle 9 kDa protein

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0045900 negative regulation of translational elongation biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03109 SRP9; signal recognition particle subunit SRP9

RNA

RNA id representative length rna type GC content exon number start site end site
TU206468 False 1202 lncRNA 0.39 3 18758652 18760195
XM_043219451.1 True 1239 mRNA 0.39 3 18758629 18760209
Loading

Neighbor

gene id symbol gene type direction distance location
opn5 opn5,LOC107732377,LOC107732532,LOC107553443,LOC107698323,LOC107601485,LOC107690038 coding upstream 232248 18515225 ~ 18526381 (+)
LOC122324770 LOC107698347,LOC107732411,LOC107690037 coding upstream 250727 18477309 ~ 18507902 (+)
mep1a.2 mep1a.2,LOC107719099,LOC107696095,LOC107601466 coding upstream 414881 18337940 ~ 18343748 (+)
mep1a.1 mep1a.1,LOC107696105,LOC107601486,LOC107719100 coding upstream 421448 18332510 ~ 18337181 (+)
tdrd6 LOC107732403,LOC107698349,LOC107719088,LOC107696190 coding upstream 432761 18316265 ~ 18325868 (+)
ephx1 ephx1,LOC107553477,LOC107732537,LOC107601524 coding downstream 220 18760429 ~ 18764704 (+)
ncoa1 ncoa1,LOC107727606,LOC107710951,LOC107675037 coding downstream 25844 18786053 ~ 18829653 (+)
heca LOC107675110,LOC107553472,LOC107689451,LOC107558939 coding downstream 79528 18839737 ~ 18844505 (+)
gje1a cx23,LOC107675059,LOC107717056,LOC107553438,LOC107558943,LOC107689460,LOC107727597 coding downstream 253372 19013581 ~ 19015254 (+)
vta1 vta1,LOC107689447,LOC107558942,LOC107675102 coding downstream 256127 19016336 ~ 19043921 (+)
G139756 NA non-coding upstream 71703 18680896 ~ 18686926 (+)
G139557 NA non-coding upstream 248607 18509569 ~ 18510022 (+)
G139555 NA non-coding upstream 281624 18476352 ~ 18477005 (+)
LOC122324773 NA non-coding upstream 287553 18467995 ~ 18471076 (+)
G139543 NA non-coding upstream 309199 18449019 ~ 18449430 (+)
G139785 txlnba,LOC107553470,LOC107727608,LOC107710955 non-coding downstream 98399 18858608 ~ 18859582 (+)
G139847 NA non-coding downstream 283862 19044071 ~ 19044201 (+)
G139851 hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 non-coding downstream 336077 19096286 ~ 19100392 (+)
G139857 NA non-coding downstream 354909 19115118 ~ 19115376 (+)
G139865 NA non-coding downstream 398922 19159131 ~ 19159493 (+)
cnih3 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC108440801,LOC108248696,LOC106527994,LOC106571455,LOC107095392 other upstream 123966 18608512 ~ 18634663 (+)
il17a/f3 stmn4,LOC107698329,LOC107553446,LOC107732387,LOC107719388,LOC103148820,LOC106907996,LOC106571034,LOC106608277 other upstream 724451 18029130 ~ 18034178 (+)
ivns1abpa ivns1abpa,LOC107732388,LOC107726450,LOC107553504,LOC107599089,LOC107696153 other upstream 956179 17789294 ~ 17802450 (+)
henmt1 henmt1,LOC107710559,LOC107698398,LOC107555628,LOC107601273,LOC107726462 other upstream 1256614 17496895 ~ 17502015 (+)
LOC122325444 rps7,LOC107668222 other upstream 2836349 15721861 ~ 15922280 (+)
abracl abracl,LOC107727609,LOC107553474,LOC107689463,LOC107558932 other downstream 75945 18836154 ~ 18839302 (+)
G139780 LOC107689450,LOC107553470 other downstream 86084 18846293 ~ 18852580 (+)
G139788 cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469 other downstream 111198 18871407 ~ 18873604 (+)
tatdn3 tatdn3,LOC107727653 other downstream 498588 19258797 ~ 19262323 (+)
LOC122324992 LOC107727591,LOC107575643,LOC107676232,LOC107675054,LOC107598100 other downstream 663347 19423556 ~ 19424387 (+)

Expression

srp9(srp9,LOC107553440,LOC107601484) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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srp9(srp9,LOC107553440,LOC107601484) Expression in each Bioproject

Bar chart with 2 bars.
srp9(srp9,LOC107553440,LOC107601484) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
End of interactive chart.

Co-expression Network