G139798 (cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529)


Basic Information

Item Value
gene id G139798
gene name cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18627307 ~ 18634666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU206504
AGCGGTTTTAAAAtagtctgttttatttcatatacaaATTTCGTAACTGATATTTGGATGGGTGAACACGTCCACAATAAGGATATAGAAAATGTTTGGTCATCGTATGTGTAACTACATAAGGCATACAAAAGACAGCAGGCTACATGACAGCAGCAGAGTATAGTACTGCTGGGGACTGGTATTATTATCCCCTACACGGCAATGAAAATGATGTAGTGTGTCTACTGCTATTTTCAGTACTCTGCATTATATATGGTGCTCATCCAAAGCATCACGTAGATGTCTTGAGGGGTTTATGCTTATATGCATCATGTGGTTACTCCGGACAGTTAGCCTGACTGATCCAACAAcatagttcatttaaaagctgTAGAAGGTGTGAGTTTggagttttttttaagaaccaaaaaaaagagaaatgatgatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatggagtAAACAAACTCAATGATTCCTTAAATAATTGTTTCAGTATTGCTGACCTTGTCGTATAACAGTAATAcagttaatataataacaataatacaaaatgagAAAGTGAAATTCATAGACCATGAGCTGTGGTTTTAATTTCTTCcctagaataaaaatgtatgatactTTGATGCACTGTAATATATTGGAAGACTCTTACTGGGTATATCAATATGACTTATTTTTCCACCACAACCAATAACTGTATCTATTGTGCAAACTCATAACAACTTTGTGCAAAAATTGTGGAAAAGTGGCTCTTGTTTTCTATAATAAAGCCTCGATATAAAGTCCAAAAACATTTCAACCCACTGACACCAACACATAAAAGCATTACACAAAGTTCTCTATGTACACAAGTAATGCAACAGATAcgtatttcatattaaaaatgcttattttaggagtgcacagatacacacaaaatatatcacaaaaGCTTCCCACGTAATCAAATTCAGTGGCCTAGTATGTGACtggtaaaaatgaaacattcgCTGATCAAGTTAGCCATCGTTCTTCCTTTTCCTATGTTTTAACCCGACATGAATTTGAAGCTACATATAGTGAGTGTAAAGGTTGGCAGGTTTTGTGCCTCAAAGTGGTAAAGGACATGTTGTGCTATGCCTGAGACAATCTGTGCAAATGTTACTGTGAGCTTGTGAAAAGCACGTCACACCAGGTCTATGAGACATCTAGGGCGTTGAGTCAGATCTGTAAACAACACTGGGTTCTTCTGATACTCTGGGGAGATGGGGTCAAGTCTTCTGTGTAGGTTCAGACACTGCAGTGTGTTGAACTTGTGTCTAGCGGTGCTCTTGTTTCATCCAAATGTAGTTTAGAGCTTTCGGAAAACAGTGTCTTATGAGCGGTGTTGAGAACTCTGTTATGAGGTCACCAAGGAGTAGATCATACTGGAAGACAGAACAAACAAGTGTTACTGACattgtgtgcaaaaaaagttatacttttttaaaactattgggtaaaatcgaataaatgttgTTCCGATTTGCTAACAACTTACACAAGATCTTGGTTGTGGGCCATATTCAAAGTTATTTTGATCTGTTTACTTGAAGGTGGCAAATGAGCTATTTAAAATGCCCAGAAACACCAGAAGTAGTTTATAACGTCAAACTTGCACTCATGATTGCAGTGAGCTGtgattaaatcaattaaactaattaaatcaatcaaactTATCCTAGTTTATCCTAAAGACAAATATTGTAGTTAAAGCATCTCATACTAGAAATAGATTTGTAAATAACAAtccattttacattataattaaaaaacaacaacaaccaactAGATGTctatatattctgaaaaaaatgtgattgataaatagacagattaattaactttaattaatttcagaaaTTACATCACTCCCATCCTGTGCACTGAAACGGGGACTTCTCCCTTCGTGCACGTTACTTTTCGATTCTGATGAAATGAGCTTGTGCCCGTGGGTTCAATCATTCTGTCAGGGAACGGCTTTAATTAGTTCATTTCTCCCTAgctaacaacaaacacaaagatgCATTTTGTCCCCAAATTATCCAGCTGAAACTGCAGCGTTCATCCTCAGCTGGTGGAGGCATGGAAACATAAGACAAGAGGCTTCAAAGCACTTGATGCTATGGAAAATGACAGCTTCGCCAGCTTGAGGATCACTCCAGGCAGGTCGTGTATGATAtggattgtatttatttagaatgcaCTGCCATATGTTGATGTATGTTGAATTTCTGTGCTGACTTCACACTAGAGGCCATTGATGTCATGCCAGAATGCTGTCCAGAAgcattaatacataataagGGGTTGCCCTGATAAAAACTGCATAAGCAGTTCTTGGCTCGCTGTGTCTTATTATTTTCAGCGCGTGGGGGTTGGAAAAGTAGCAGCGTGGATCCTATTtctaatctttttaaaaagaaagcagaTCTAGTGATGCTCTTTGAAATGATATCACTGCTGCATATGAAgcatatatatttgatttcattaggAAATGTTTTTCGAATGTTGAGTGTCATGATTATATTCAGTGCACATAGCCAAAGTCTTATCCCAAATCTAAAGATGTATTATTAAGGACTGCTGCTTATCTGTGTcccaaaaacacaattttagtGTTCATGTTGAAAGTGGTAGATCAATGAAAAACGTATTGCGGCTATGATCAGAGATATGATCCTGGTGGAGCCCGAGGCATACAATGTTCCTTATGCCTTTGCAATCTTTGTGAAACTTGAACACACGAGAACTAGTGTGATGTTTGTCCAAATCTCGCTCTTTCACTTCTGTCGGAGTGGCACAATACTTTTCTTGAGTCATTAGGTTTGaatggtgtttaaaaaaaacgaacgaCAAACCCAGCTATTGTAATTGGATGGGTGATGGCCTGGTGCGCTGATATTGGATTTGCAATTGATTTGTAAGATTGACTCGGGAGAGGTAGCACAAAACTGTGGTTGTTACAAAAGGTTAGAGTACAAAGAAAGTTTGAAGATCAAGCCACAGGGGTTAAACTAAGGCAGACAAATGGGCAGCATTCATCAAATAAGATGTTATATACGTATTTATAATCTTGTAGTAATTTGCCACAGTTAcaatcattttcaatttttttatttttatttttttctgggtgaactatccctttaagtttaAAATAGGGCCAAGTAAGCAACTGACCCTTTGGGGgaagtttgattgacaggcgcTCTGACCAATCATACATACAAACCCAGCAACTACCCAGCATGTTTGGTCAAATATTTAACCCAACATGTTGGGTTGTTTTAATTAACTCAAACACTGATTGGAAATTACATTTCCTGGCTTACAATGAATCAAAAATAGGatggaaattaaaaagcagACACAGAATTACTAAAGACAACAGTAATAATCAAAACGTGAAGATTTATTAATAAGTGAAAACACCCATGTAGAAAAATATAAGACAAATTGAATTATGTACGAATTATGCATTCATCTCCATTAACAAGCATTTTAGAAAGTGTATTAAATTGTTCTCTGATGTTCTTTTTAACCAAAATAGCACTGATTAGTGTGCCAGTGTGTCGCTGAAATATAAGTCGGTGATGGGCTATTTCCTGTGGAAACTGCGAAAGTTAGACTGCTGCCTTGCGTTTCATCCATAGCTGAAGGAAGCCAATGCTGTTACTTCATAACctgttcaaaaacaaacagcacaaagTTGTGAGAAAATATTTATCATCCGAATAAATTAGAAgcagtattataaatattaaagtcaGTTTATATGCAATTCAAGGCATTTCCGTCACACAAAACGACAGTTGCTGACGCATTTAACTGACTGACATATCATCTGTATGCTGCGTTgcgtgaaataaaattatttacaatacaataaaagacTTAGGAGATAGAATAAAACGTATACGAACCTTTTCTTCACTGAAGAAGTCCAGTAACTCGACGGCGCTGAGGACTGACCGAATGAAAAGCCAGTGCTCCAACTGTAGCCCAACAGCTGGGTTAAAACGTCTGCGCTAGATTATTTCGTCAGAGGGACGGGGAGGGGTGTATACTTTTATGGAGATGAACCCAGCCACTAACCCAACAGCTGGGTTACACAAAAACTACCCAACAGTGGAAAAAATAACTTAACATAGTGACTCAACAGGCAGAACCCAGCAGTTGGGTTAAAACAATAACCCAGCTTTTTTAGAGTGTAACACCGAATCTGCCATTTTGTCCGGCAAACAAACCAGTCAGGAGAATCGATTAACATTGGTGGACTTGAACATGAAAAGTGGTGTGAACTGATGTCTTTCCGCGGATGAAACAAGATACCTTCTGACGTTTACCATGTTCATTTCATGCTATAActagtaaaaatttaaaaatgatcaattcaAGTGCTGTTTGAAGTGCTATTGATCTGTcgcaatacaataaaacagtatttgagtaacaaaacagtatttattgtttaaatttctttaaaaactgtctTATTCTATTTtgtaatctgtgtttttttctgcaaaaaaactGTGGATATGCACTCCTAATAAGATTTATTTCATAGATTGAAACACATAGTCATAGTTTTAATAAGAATGCACACTGGTTTGCCTATTATGCAGTCAATGtactctttatatattatttatacaatcactgaacttgttaaaaaaatgtgtgaatatatttatgaaataactGTACTCATAAACGGGTGCAGTGCGGACACTTTAGAAATAAGACAGTGAAagacaatgaaaaatatatttttatgtctcTTTGTGAGccgaataaaacatttttagtttttagttacTAAAGTAACCTGCCCTGTCTTGACTTTCGTTACGTTGTCAGTGTCGTCTTTGCTccgcaatgttttttttcaattcattaGAATATGATGTGTGGCTTGAGAGCTCCATGGATTGCCagacatagcaacagtaacAAAGGGGGTGGGTCTGCAAAGGGGTCAATTACAAGAGGGTTAAAGGTCAAAGTTACAGAGACCATTATTTTTAAGACCTGTGACTGTTTCACAAAGTGTGGCACAATTAGGTGAAGTTTAAGTTGTGCATAACCACTCACTACCATAACTCCTCAAAGAGTGGGTGAGTGCAAAAGACCCTGAACAAAAAGGCTGTGTTTGTCCTAGAATTTCAATTCCAGAAGCAAATAGCGTTAAATAATGCAGAACATGGCTGGTGCACAACAATTGCCTTTGATCTGACAAAAGGTCATAAGGCTTGCTTGCTGGAAGGGTGAACCTTTATAGAATATGTgcgttttaaatgtgtatattaacatttaatgtgaCGCTATATAgtgtggaggaaaaaaagaattcaGGAATTCTACCCAAAGGCATGTTGCTGGCGCCATCCAAGTGCGTCCTTGTCAGTTCAAATgcttgtttatgtatatatctCTGCTATGCTATAGGCTTAAGGTAGCTTATACTATAGCAAAGGCACACACTAAAAAGCATATTTGGctgtaatgatataaaaatcaGTAAATGCATTGCACAGAATCCCATTAAGAGGCAATTAAGCTTGGTCGAGACAACTGCTGGATATCTACTCACCAATAGAGATAGTAGAAGAAAGAGAGGACAAAGAAGGACATCTTGCACCAGGCTTCTTTTTGGCAGAATTTGAGTGTGTCTCCGTTCATGACTGATGCTGGATCGTAGAGAAGCTCCTTAGTGTCTGTGGGGCTGTGAAAGTACCTGCTCCATGTGTTGTAGAAGAGCAGAGGGATATTCAGGCCTACAGTAAGCCACTCCTGAGCACACAGGAACATGATACAGAAGAGTCCATGGATAGAGTACTCTGGAAGCACCAACTAAAGAGaacaaatagataaatagcGTTTAATAGTATATTTTGTCTGTGATGATAGCCTCGTGATTACTGTGCTGACATGTAATGCCACCGTGCTCATGCAGGGTAGctccatatttaatttttaaaagaaattaaaagaagggatgaaagtaCAG

Function

symbol description
cnih3 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Orthologous to human CNIH3 (cornichon family AMPA receptor auxiliary protein 3).

NR:

description
PREDICTED: protein cornichon homolog 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206504 True 6077 lncRNA 0.37 3 18627307 18634666

Neighbor

gene id symbol gene type direction distance location
LOC122325333 spats1,LOC107553422,LOC107736684,LOC107601458 coding downstream 19764 18604651 ~ 18607543 (-)
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding downstream 72013 18528438 ~ 18555294 (-)
tnfrsf21 tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348 coding downstream 154048 18453708 ~ 18473259 (-)
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding downstream 179935 18431833 ~ 18447372 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding downstream 195627 18419791 ~ 18431680 (-)
si:dkey-1j5.4 si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529 coding upstream 26843 18661509 ~ 18669079 (-)
lbr LOC107732420,LOC107553478,LOC107698344,LOC107601526,LOC107732539,LOC107690042 coding upstream 36286 18670952 ~ 18679703 (-)
enah enah,LOC107732530,LOC107601525,LOC107732354 coding upstream 46227 18680893 ~ 18733506 (-)
slc5a6a slc5a6,slc5a6a,LOC107553475,LOC107689456,LOC107690043,LOC107601523 coding upstream 131493 18766159 ~ 18779707 (-)
rpl7l1 rpl7l1,LOC107689455,LOC107690050 coding upstream 146937 18781603 ~ 18784598 (-)
G139790 NA non-coding downstream 28395 18598694 ~ 18598912 (-)
LOC122324299 NA non-coding downstream 175175 18449944 ~ 18452132 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 215453 18405804 ~ 18411854 (-)
G139704 NA non-coding downstream 284977 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 286124 18340729 ~ 18341183 (-)
G139801 NA non-coding upstream 34772 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 190214 18824880 ~ 18829799 (-)
G139871 NA non-coding upstream 406124 19040790 ~ 19043914 (-)
G139903 NA non-coding upstream 525172 19159838 ~ 19160157 (-)
G139940 NA non-coding upstream 589714 19224380 ~ 19250790 (-)
G139706 LOC107683600,LOC107601464 other downstream 180358 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 277185 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 803106 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1199184 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2165091 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 620068 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 626800 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 663568 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 966866 19601532 ~ 19615202 (-)
G140227 cad other upstream 1422958 20057624 ~ 20059603 (-)

Expression


Co-expression Network