batf3 (batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089)


Basic Information

Item Value
gene id batf3
gene name batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19254734 ~ 19256272 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU206720
AAGAACATCCGCCGAAGGCATTTGCAAGAAATCGTCTATGTTACTGAGGGATGTTGACTGACAGTTTAAACATGCCTAACTATGCGCTAATTAAAACGAAGCAATAATTAGCCTTAATTTTCCGTAAAAACCGTGAACGGAAGTCTTTTGCACCTGTCATGTCACTTTTTAGTGCGACAAGTAACTTCACTCGAAATGATGCGACAGCTTTACGGTTATTTCGAAAAAGTGAGAGCTCCGATGATGAAGAGAAAAGGTcgaaaaggagagaaaaaaaccgAGTTGCTGCACAGAGGAGCCGCAAAAGACAAACCCAGAGAGCTGATGAGTTGCATGAGGCATATGAATGTCTGGAACAGGAGAACAGCCTGCTGAGGAAGGAAGTCCAGCTTTTGTTAGAGGAACAGCAACGCTTGACAGATGCCCTCAAAGCCCACGAGCCTTTGTGCCCTGTCTTCAAGGTCGGCTGGCACGATGTCGCCTGAGTTCATGTCTAGATAGAGACGCTCACACCTGAAGCTCACAATGTCCGACTTTCCATTTGAGGTTAAGTTAAGCATACTTGTAATCATGCAAAGGATgcaagttttagttttttattccGAAAGTATTAACGTTTGAGTTCAGCGTGCAGTGTTTTCTGTCAACATACAAGCGAATTATTAAGTCATGCTTGAAATTGCATTGTAATGTTCGGATTACAGGATCTTTGTAGTCGTACGTTTGTTTTCCCAGGGTCACCCCTCACATGAATACATCCACTATTTACTTTGATAGAGTCAATAACCACTAACTTAACCACCTGCTATACCACAGTTAGTTGGCTGTGAATGAAACGACATGCGACAATGGACTTCTGCTTTATGAGAGCCAATCTGACCAAAATACCAGAGGTTAGTTTCGAAACTCCGTGACAGCAGGTTTGCGtctgcattacattattaattgctgtttaaaaatagcttaattCAGATGTTGgtgttatttttctgtcttgCTTAATCATGATTTGTCGCTGGAGTGCATTGTAAGTATTCGAAAAATaaac
>XM_043218875.1
AGCACCACGTGACTTCAAAGAACATCCGCCGAAGGCATTTGCAAGAAATCGTCTATGTTACTGAGGGATGTTGACTGACAGTTTAAACATGCCTAACTATGCGCTAATTAAAACGAAGCAATAATTAGCCTTAATTTTCCGTAAAAACCGTGAACGGAAGTCTTTTGCACCTGTCATGTCACTTTTTAGTGCGACAAGTAACTTCACTCGAAATGATGCGACAGCTTTACGGTTATTTCGAAAAAGTGAGAGCTCCGATGATGAAGAGAAAAGGTcgaaaaggagagaaaaaaaccgAGTTGCTGCACAGAGGAGCCGCAAAAGACAAACCCAGAGAGCTGATGAGTTGCATGAGGCATATGAATGTCTGGAACAGGAGAACAGCCTGCTGAGGAAGGAAGTCCAGCTTTTGTTAGAGGAACAGCAACGCTTGACAGATGCCCTCAAAGCCCACGAGCCTTTGTGCCCTGTCTTCAAGGTCGGCTGGCACGATGTCGCCTGAGTTCATGTCTAGATAGAGACGCTCACACCTGAAGCTCACAATGTCCGACTTTCCATTTGAGGTTAAGTTAAGCATACTTGTAATCATGCAAAGGATgcaagttttagttttttattccGAAAGTATTAACGTTTGAGTTCAGCGTGCAGTGTTTTCTGTCAACATACAAGCGAATTATTAAGTCATGCTTGAAATTGCATTGTAATGTTCGGATTACAGGATCTTTGTAGTCGTACGTTTGTTTTCCCAGGGTCACCCCTCACATGAATACATCCACTATTTACTTTGATAGAGTCAATAACCACTAACTTAACCACCTGCTATACCACAGTTAGTTGGCTGTGAATGAAACGACATGCGACAATGGACTTCTGCTTTATGAGAGCCAATCTGACCAAAATACCAGAGGTTAGTTTCGAAACTCCGTGACAGCAGGTTTGCGtctgcattacattattaattgctgtttaaaaatagcttaattCAGATGTTGgtgttatttttctgtcttgCTTAATCATGATTTGTCGCTGGAGTGCATTGTAAGTATTCGAAAAATaaaccattattttttacaaatcgCCCTGTTTATTCAATCTGTGAAATACGGTACTTACTCAAATTGAAATAGTCATacaa

Function

symbol description
batf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3).

NR:

description
basic leucine zipper transcriptional factor ATF-like 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU206720 False 1048 TUCP 0.41 3 19254810 19256255
XM_043218875.1 True 1141 mRNA 0.41 3 19254734 19256272

Neighbor

gene id symbol gene type direction distance location
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding downstream 21917 19179809 ~ 19232817 (-)
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding downstream 88726 19096279 ~ 19166008 (-)
si:ch211-202p1.5 LOC107689457,LOC107727565,LOC107717067,LOC107675103,LOC107558944,LOC107553437 coding downstream 167549 19082545 ~ 19087185 (-)
trnaf-gaa_119 NA coding downstream 178616 19076046 ~ 19076118 (-)
nmbr nmbr,LOC107553439,LOC107727594,LOC107689462,LOC107675069,LOC107717045,LOC107558933 coding downstream 244555 19000843 ~ 19010179 (-)
nsl1 nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087 coding upstream 416 19256688 ~ 19258698 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding upstream 199532 19455804 ~ 19487350 (-)
si:ch211-245h14.1 NA coding upstream 257808 19514080 ~ 19516523 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding upstream 286105 19542377 ~ 19554327 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 360489 19616761 ~ 19628027 (-)
G139940 NA non-coding downstream 3944 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 94577 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 210820 19040790 ~ 19043914 (-)
G139823 NA non-coding downstream 424935 18824880 ~ 18829799 (-)
G139801 NA non-coding downstream 583801 18669438 ~ 18670933 (-)
G140152 NA non-coding upstream 78807 19335079 ~ 19341060 (-)
G140175 NA non-coding upstream 189556 19445828 ~ 19448712 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 480668 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 544250 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 649359 19905631 ~ 19909647 (-)
G139706 LOC107683600,LOC107601464 other downstream 807785 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 904612 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 1430533 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1826611 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2792518 16455468 ~ 16462216 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 5194 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 41962 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 345260 19601532 ~ 19615202 (-)
G140227 cad other upstream 801352 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 805330 20061602 ~ 20062977 (-)

Expression


Co-expression Network