LOC122324949 (LOC107676261,LOC107727654,LOC107553459)


Basic Information

Item Value
gene id LOC122324949
gene name LOC107676261,LOC107727654,LOC107553459
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19261466 ~ 19262952 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU206721
CTTCCGGCTACACTTCTGGTTACCATGGTTACAGTCGTTTCAGTCAACAAAGACTGAAATGACCACATGCAAATTCGACTTAACAAGTAGCCTACATTAGCAACAATGTCAAAATCAAAGCAAGACCAACTGTACGAGTTGAACATGCAGAGGGAGACGTGGTGTCGCGTGGAGACAACCAGTAGGTTCTGGAATTTAGCCGAAAGGAAACACTTCCGTTGTCACCTCAAGAACACCTGCGACTTCCGCGCGCTGCAGACCGCGCGCCCCGAGCAGCGATCCTCCTGGATGATGGACGGCGACAGCAACACCAGACATCCCGAGCGAAGACACTTCGAAGACAGCTATAAAACTCATCAGGTGTTAGGAACTGCAATCAACCTCTACGAAGAGTGAATGTTTTTCTCCACACGACAATAAACGTGTAATGAGCGGATCTGGCAATAAAACAGTGGTttagtacttatttattttatttaaatagtaatcTCATTGCCATACTGTTAAGATTTTGACACACTCTCCTCTGAGAGATCCCCATGTCCTTGTCCTCTCTACAActcagtttttttattgcattcccACACGGATGCTTTCCTCCCTTTTTCTGTGCAATTTAGTTTTTCCTTAATGTTCTGTAGCATCTCTCATAGACACATGTGTCTGGATGTTAGAAGGGTCCAGTCTTGctacacttttgatacttggcaaaaagaagtgttttttgttgtcCATGAGTATTCCTTATAACTTCCTTTTGATATCTCTATCTTATATAAgtacacatttttttggcatgtaTGCAACATGCGCCATCTTTGGTTTCATTGGCTAGAGGGGTAAAACTCCCCTCTGAAAATGCCTAAATAAACCATTGTATTTGGAAATAAATTTCGGAGCAAGGATATAtacgtctctgtgtgttttcttcctCCACaaattatatcaaaatattaattctagGTTTTTAACTTGGAAAACAATCGAAGGGCATTTTGCGTCGTGACTTCCATAACCACGTCTGAAGATAGTCCCTTAACTTTTGCAATGTAGTCACAGCAGATCTTTATGTTTCC
>XM_043219739.1
CTGAGGatggattatttttaattgcccTTTTGGggtgcatttcttttttttacaaagagcTTGCAACCCCACAACTTCCGGCTACACTTCTGGTTACCATGGTTACAGTCGTTTCAGTCAACAAAGACTGAAATGACCACATGCAAATTCGACTTAACAAGTAGCCTACATTAGCAACAATGTCAAAATCAAAGCAAGACCAACTGTACGAGTTGAACATGCAGAGGGAGACGTGGTGTCGCGTGGAGACAACCAGTAGGTTCTGGAATTTAGCCGAAAGGAAACACTTCCGTTGTCACCTCAAGAACACCTGCGACTTCCGCGCGCTGCAGACCGCGCGCCCCGAGCAGCGATCCTCCTGGATGATGGACGGCGACAGCAACACCAGACATCCCGAGCGAAGACACTTCGAAGACAGCTATAAAACTCATCAGGTGTTAGGAACTGCAATCAACCTCTACGAAGAGTGAATGTTTTTCTCCACACGACAATAAACGTGTAATGAGCGGATCTGGCAATAAAACAGTGGTttagtacttatttattttatt

Function

NR:

description
PREDICTED: spermatogenesis-associated protein 45-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206721 True 1076 TUCP 0.41 3 19261466 19262878
XM_043219739.1 False 551 mRNA 0.46 2 19262324 19262952

Neighbor

gene id symbol gene type direction distance location
nsl1 nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087 coding downstream 2768 19256688 ~ 19258698 (-)
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding downstream 28649 19179809 ~ 19232817 (-)
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding downstream 95458 19096279 ~ 19166008 (-)
si:ch211-202p1.5 LOC107689457,LOC107727565,LOC107717067,LOC107675103,LOC107558944,LOC107553437 coding downstream 174281 19082545 ~ 19087185 (-)
trnaf-gaa_119 NA coding downstream 185348 19076046 ~ 19076118 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding upstream 192852 19455804 ~ 19487350 (-)
si:ch211-245h14.1 NA coding upstream 251128 19514080 ~ 19516523 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding upstream 279425 19542377 ~ 19554327 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 353809 19616761 ~ 19628027 (-)
cad cad coding upstream 365834 19628786 ~ 19647088 (-)
G139940 NA non-coding downstream 10676 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 101309 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 217552 19040790 ~ 19043914 (-)
G139823 NA non-coding downstream 431667 18824880 ~ 18829799 (-)
G139801 NA non-coding downstream 590533 18669438 ~ 18670933 (-)
G140152 NA non-coding upstream 72127 19335079 ~ 19341060 (-)
G140175 NA non-coding upstream 182876 19445828 ~ 19448712 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 473988 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 537570 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 642679 19905631 ~ 19909647 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 5194 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 814517 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 911344 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 1437265 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1833343 17346806 ~ 17428123 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 35282 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 338580 19601532 ~ 19615202 (-)
G140227 cad other upstream 794672 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 798650 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 1147677 20410629 ~ 20542249 (-)

Expression


Co-expression Network