G140227 (cad)



Basic Information


Item Value
gene id G140227
gene name cad
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20057624 ~ 20059603 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU207099
AGTCTGCTGTGGGTTTCTGTGAGACGGTGGGTTATCCCTGCTTAGTGAGGCCATCGTATGTTCTCAGCGGGGCTGCTATGAATGTTGCCTACTCGGACAGTGATCTGGAAAAAGTACCTTAGCAATGCTGTTGCTGTGTCAAAGGAACATCCTGTTGTTATCTCCAAATTCATTCAAGAGGCCAAGGAGATAGATGTGGATGCTGTGGCCTGTGACGGAGTGGTCATTGCTATAGCGGTGTCTGAGCATGTGGAGAACGCAGGGGTACATTCTGGAGATGCTACACTGGTGACTCCCCCTCAAGACATCAACCAGAAAACCATGGAGCGCATTAAGATGATTGTTCACGCGATCGGACAAGAGCTTCAGGTCACCGGCCCCTTCAACCTGCAGCTCATTGCCAAAGATGATCAGCTGAAGGTGATAGAATGCAATGTGCGAGTCTCACGCTCCTTcccttttgtgtccaaaacacTTGGTGTGGATCTTGTTGCCCTAGCAACAAGAGTCATATTGGGAGAGGAATTTGAGGCTGTCGGGCTGATGAGGGGGATTGGCATTGTGGGAGTTAAGGTTCCTCAGTTCTCCTTCTCACGGCTGGCTGGAGCAGATGTGGT
>TU207100
GACGGAGTGGTCATTGCTATAGCGGTGTCTGAGCATGTGGAGAACGCAGGGGTACATTCTGGAGATGCTACACTGGTGACTCCCCCTCAAGACATCAACCAGAAAACCATGGAGCGCATTAAGATGATTGTTCACGCGATCGGACAAGAGCTTCAGGTCACCGGCCCCTTCAACCTGCAGCTCATTGCCAAAGATGATCAGCTGAAGGTGATAGAATGCAATGTGCGAGTCTCACGCTCCTTcccttttgtgtccaaaacacTTGGTGTGGATCTTGTTGCCCTAGCAACAAGAGTCATATTGGGAGAGGAATTTGAGGCTGTCGGGCTGATGAGGGGGATTGGCATTGTGGGAGTTAAGGTTCCTCAGTTCTCCTTCTCACGGCTGGCTGGAGCAGATGTGGT

Function


symbol description
cad Predicted to enable aspartate carbamoyltransferase activity and dihydroorotase activity. Acts upstream of or within several processes, including 'de novo' pyrimidine nucleobase biosynthetic process; cranial nerve morphogenesis; and regulation of signal transduction. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 50. Orthologous to human CAD (carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU207099 True 617 TUCP 0.50 4 20057624 20059603
TU207100 False 404 TUCP 0.51 3 20057624 20058499
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 208579 19827100 ~ 19849045 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 406495 19649188 ~ 19651129 (-)
cad cad coding downstream 410536 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 429597 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 503297 19542377 ~ 19554327 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 9803 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 113945 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 171372 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 198650 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 233691 20293294 ~ 20296159 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 147977 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 255956 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 317261 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 608912 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 716564 19335079 ~ 19341060 (-)
G140304 NA non-coding upstream 88677 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 207065 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 226877 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 567052 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 676985 20736588 ~ 20791701 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 442422 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 753656 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 794672 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 801352 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1610675 18406027 ~ 18446949 (-)
G140277 cad,LOC107602171 other upstream 1999 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 351026 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 574693 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 908585 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 1029801 21089404 ~ 21091008 (-)

Expression


G140227(cad) Expression in all Baseline Samples

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G140227(cad) Expression in each Bioproject

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G140227(cad) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network