G140240 (adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491)


Basic Information

Item Value
gene id G140240
gene name adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19736940 ~ 19740363 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207123
CTTGTTGTATATGGGTGCAAAAATGAGCGGTTTGGAGGCTGTGGATCTGTCCTGGACGTCTCATCAGATCATTTGCCACACACTGGAACTTCATTTAAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGGTAAAACGAGGACCGCGAGATGAGGAGAGCGAAACAATTGCTCCTTTGAGCtgaaatggaaaacatttaGACTTTGAGACTTTTACAAGAGCTTGTCAGTGAATGGATCTCAATGACGTTTGATTTTGCGGTCACTGATTTGATCTACTATTTGAAGAACCACATTGGCTCATTATCTGGACCACATAGCTCGTAAACCTCCAGACCTCTTCTTCTCTGCGGCTGGCCGCTGTGAGTTGTCTGTTAACAGTGTGTAGAAGCAATAGACTGAGCCTGTTCTGCATTAAAGAGCAGGTTCTTCTCCAGCTCTTGCTCTCTTTGTGTCCTCATACAACCCAGAGAACTGTTTCTGAACTCTCGATGATCTCAGTCTTGGGCTCACTAGCAGATGCGGGACAAACCCAGGTGGAGTTTCCACTTACTTCATAGCCAGAAACTTTAAGGGGatagttaaaaattaatttctgtcaGTACTTTCTCAcacgactttttttttcttcaatggaGCATGAAAGTTGAATTTTATaaagagtg
>TU207124
CTGAACGGTCCGTCCACTATTGCGTTCCCCCGCAAACACGTGTGCGTCACTAAAATGTTACTTTCCTGATTTGcgctgctttatttttttacggtTATACGTTAGATTTGACGAGGATACCGATGGAGATGCGAGGAGACAGTGTCGAACCtgaaaaaagtgattttctgCAGCCGGTAGATAGTGAGATACAAACATGGATGTCAAAGGCCTTTGGCATGgcACTTGATGCCCTTGAGAATGGAGAGGTTCCAGTTGGCTGTCTGATGGTTTTTAACAACGAGATCATTGGAAAGGGAAGGAATGAGgtgaatgaaa
>TU207125
CATTCTAAAACAATTCTGTGTGGCCAGAATATTTTTCTTGTCAAAACATCCACATTCCCTAAATTGTAGCCCAGACCACATGACATATTTTTGCTGTAGCCGCGTGCTTGCTTGCTTATTACAGTGCATCGCTGGCTATAGAGCAGAAGAGGCCGTCGACATGCTcaagacattttataaacagGAAAACCCAAATGCTCCCAAACCTAAAGTGAGGAAAGATTTGATCAGTCCACCAGATGTCGCTGTAGTCATTCAGGTAAAACGAGGACCGCGAGATGAGGAGAGCGAAACAATTGCTCCTTTGAGCtgaaatggaaaacatttaGACTTTGAGACTTTTACAAGAGCTTGTCAGTGAATGGATCTCAATGACGTTTGATTTTGCGGTCACTGATTTGATCTACTATTTGAAGAACCACATTGGCTCATTATCTGGACCACATAGCTCGTAAACCTCCAGACCTCTTCTTCTCTGCGGCTGGCCGCTGTGAGTTGTCTGTTAACAGTGTGTAGAAGCAATAGACTGAGCCTGTTCTGCATTAAAGAGCAGGTTCTTCTCCAGCTCTTGCTCTCTTTGTGTCCTCATACAACCCAGAGAACTGTTTCTGAACTCTCGATGATCTCAGTCTTGGGCTCACTAGCAGATGCGGGACAAACCCAGGTGGAGTTTCCACTTACTTCATAGCCAGAAACTTTAAGGGGatagttaaaaattaatttctgtcaGTACTTTCTCAcacgactttttttttcttcaatggaGCATGAAAGTTGAATTTTATaaagagtg

Function

symbol description
adat2 Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Predicted to act upstream of or within tRNA processing. Orthologous to human ADAT2 (adenosine deaminase tRNA specific 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207123 False 768 lncRNA 0.43 3 19736940 19737992
TU207124 False 318 lncRNA 0.45 2 19739699 19740363
TU207125 True 793 lncRNA 0.42 2 19736940 19737817

Neighbor

gene id symbol gene type direction distance location
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 85811 19649188 ~ 19651129 (-)
cad cad coding downstream 89852 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 108913 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 182613 19542377 ~ 19554327 (-)
si:ch211-245h14.1 NA coding downstream 220417 19514080 ~ 19516523 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding upstream 86737 19827100 ~ 19849045 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 329043 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 433185 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 490612 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 517890 20258253 ~ 20263850 (-)
G140175 NA non-coding downstream 288228 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 395880 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 486150 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 576783 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 693026 19040790 ~ 19043914 (-)
G140248 NA non-coding upstream 60159 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 165268 19905631 ~ 19909647 (-)
G140304 NA non-coding upstream 407917 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 526305 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 546117 20286480 ~ 20286995 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 121738 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 432972 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 473988 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 480668 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1289991 18406027 ~ 18446949 (-)
G140227 cad other upstream 317261 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 321239 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 670266 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 893933 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 1227825 20968188 ~ 20975755 (-)

Expression


Co-expression Network