G140265 (ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014)


Basic Information

Item Value
gene id G140265
gene name ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19905631 ~ 19909647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207161
GTGTATTTCAATGTTTGAAAAGATCACCACTGCACGATGCATACCGTTTCACATACtgttatataacaatattgtgTGCATCTATTTGACATACTTCCACTTAGTTTTCTACAGAGGCTCCTACACGACAACTAATTTCACTGCCAAATTAAAGCACTTACCTTTAAAGCTACACTAACCGCTTTCAGCGCAAAAGAGAGCTGCTAAATATTTGCCTCTGAAATCACATCTGAAATGACCTTGGAGAAGCCGGCTCTTGGCTCTGGCCTCAGAAACATGAGTGTGTATAATCCTCGGGCTGTATCAGTTCAGTGGGTGAGGCTGAACGCAGCGGGAGGAGAGCGAACGGGTAAAATGAAAAGTGCTGATGCCAGGAAGCCCAGCAGTAAAGCTGTGGGCCGCTCGGCTAAAGTGGACTTTTCTGAATGAGCAATGAAGTAACCATGTGCTAAACAAGCTTACTGTTACGAGGGCATAAAAGAGACACTGTATAGTAATTTTTACATCACTGAAAGGATGCCACAagatttatgtataaaaatctACAATGCTCGATCATGCATGAAATGTAATAGCGGGtcgaaaaattatatataaactaagCCTTAGAGTCGAAAATGTACTTGAACCAAGTAAGTTTCAAAATATCCATCAAACCTGGTATCCATTATAGTAAGTTGCAAAGAGTGATAATAAGCTCACATTCACCATTCTTTGATACAATGCagtagaaaaatgtatttaaactcaTATGTTTTATGTACCATTTTCTCATTATAAGATCTGAATGATGTGTCCTTACAGTTTACAAGTCAAAACAACATCCTTCATCTCGATAAAGCCTCGTCTCTCGTCATATTCAACACAGACTTTCAACacatcacaattaaaaacagattGAAACTGCAGTTACACAATGGACCAATACATAGTGTTgcttttcatgaaaaaaatcatgacatcataaaaaaaaaaaaaaaaaaattaaaatgcttttcccCCCAATGTAGCGATCAAGTAAACTCAGTGGTTGTTAGTTTCCtaaagaaaatagttttcagTTGATGCCACAGGGAACTAGAACTAGTATTCAAATTTGAAATCTGAGATCACATGATCACATGTACTTTGAAAACAGTGAAAGCAAACAAACcaaattatactaaaatgtgaaatgaataaCTATAAAACTACAATCTTTGATGTTTGATTATTTCctgcaaaatattacaaatcaaatGCAAGACCGAAACTGTAAAATActtgtacattaaaataaagttttggcAAGTCTTAATTAAGGGTtctacaaaaatactgtaaaacggTAAACATTCAcggagcagaaaatcagcatatcagaatgatttttgaaaaattacgTGACACTGGAAtaacagctgctgaaaattcagctttgccatcagaataaattaaaaaaggtacAATAACATACTActatattactgtaatttttgaCCAAATCAGCCTTGACGGCAATAAGAAGACTTCTTTTATAAATCTTACCAGCCCTACATTTTGAAAggtagtttatatatttgtaaacagCTCCTCATTCAGATGATATTTTTCTTCTGTGCACATGCATGCTGATGCATTTTGGCAGGTCTGTTACCTCTGCTGATCCTTTGTTTCTCTCCGCTCAGGATTCCTGGAGTGTCAATCACACTGATGCTCTCAGAACAGGGTTGGGCAGCTGGGCACACACAAACCTGTTAAGGAAGGCATTGCCAAAGGCGTTGAGTTTCCGAAGGGTTTTGGGATCCACTACCAGTGCGTTTCCTGGTATCTGTCCATCCATGCCGTGCATCACTGCAATGAAGGAGTCAGTTGTGGGTTCTGGACCGATCCGCATACCGGGGAAGTCTTGCTCCAGAAGATATCT

Function

symbol description
ehd3 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in ciliary membrane and endosome. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye; neuromast; photoreceptor cell; and retina. Orthologous to human EHD3 (EH domain containing 3).

NR:

description
PREDICTED: EH domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207161 True 1906 lncRNA 0.37 2 19905631 19909647

Neighbor

gene id symbol gene type direction distance location
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 56586 19827100 ~ 19849045 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 254502 19649188 ~ 19651129 (-)
cad cad coding downstream 258543 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 277604 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 351304 19542377 ~ 19554327 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 159759 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 263901 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 321328 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 348606 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 383647 20293294 ~ 20296159 (-)
G140248 NA non-coding downstream 103963 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 165268 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 456919 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 564571 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 654841 19224380 ~ 19250790 (-)
G140304 NA non-coding upstream 238633 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 357021 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 376833 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 717008 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 826941 20736588 ~ 20791701 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 290429 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 601663 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 642679 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 649359 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1458682 18406027 ~ 18446949 (-)
G140227 cad other upstream 147977 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 151955 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 500982 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 724649 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 1058541 20968188 ~ 20975755 (-)

Expression


Co-expression Network