G140277 (cad,LOC107602171)


Basic Information

Item Value
gene id G140277
gene name cad,LOC107602171
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20061602 ~ 20062977 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207179
TGTGGTGTGGAGCTTACCAAACAAGGAGTGCTGGAAAAATACAAAGTGCGTGTGCTTGGAACCCCAGTGGCCTCCATAGAGAtgactgaagacagaaagatCTTTGTGGAGAAGATGGAGGAAATCAATGAGCATGTTGCCCCCAGTGAAGCAGCCATGTCTGTTGAACAGTGGCtgctgctgaaagactcggctaTCCCGTTCTGGTCCGGTCAGCTTTTGCTCTGGGTGGATTGGGTTCAGGCTTTGCAAATAACAGAGAGGAGATGATCACATTGGTCACCCAGGCCTTTGCACACACATCACAAGTTCTGGTTGACAAATCACTTAAAGGCTGGAAGGAAATAGAGTATGAAGTGGTGCGGGACGCCTATGACAACTGCATTACGGTTTGTAACATGGAGAACATTGATCCTTTAGGAATTCACACTGGGGAGTCCATAGTAGTGGCTCCTAGTCAGACACTGAATGACTATGAATACAATATGCTGAGAAACACTGCCATCAAAGTTATTCGCCACTTAAGCATTGTGGGAGAGTGCAACATTCAGTATGCTCTAAATCCTGAATCTGAGCAGTACTACATCATTGAAGTCAACGCACGTCTTTCACGAAGCTCTGCATTGGCTAGTAAGGCCACAGGTTATCCGCTGGCCTACGTGGCCGCTAAGCTTGGCATGGGAATCCCTCTGCCCATGCTCAAGAATTCGGTGACTAATTCCACAACAGCCAACTTTGAGCCCAGTCTGGATTACTGTGTGGTAAAGGTTCCTCGTTGGGATTTGAGCAAGTTCCTCAGAGTCAGCACTAAAATTGGCAGTTCAATGAAGAGTGTTGG

Function

symbol description
cad Predicted to enable aspartate carbamoyltransferase activity and dihydroorotase activity. Acts upstream of or within several processes, including 'de novo' pyrimidine nucleobase biosynthetic process; cranial nerve morphogenesis; and regulation of signal transduction. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 50. Orthologous to human CAD (carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase).

NR:

description
PREDICTED: CAD protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207179 True 838 TUCP 0.47 5 20061602 20062977

Neighbor

gene id symbol gene type direction distance location
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 212557 19827100 ~ 19849045 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 410473 19649188 ~ 19651129 (-)
cad cad coding downstream 414514 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 433575 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 507275 19542377 ~ 19554327 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 6429 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 110571 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 167998 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 195276 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 230317 20293294 ~ 20296159 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 151955 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 259934 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 321239 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 612890 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 720542 19335079 ~ 19341060 (-)
G140304 NA non-coding upstream 85303 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 203691 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 223503 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 563678 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 673611 20736588 ~ 20791701 (-)
G140227 cad other downstream 1999 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 446400 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 757634 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 798650 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 805330 19254734 ~ 19256272 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 347652 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 571319 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 905211 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 1026427 21089404 ~ 21091008 (-)
G140616 NA other upstream 1135733 21198710 ~ 21278741 (-)

Expression


Co-expression Network