G140315


Basic Information

Item Value
gene id G140315
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20266668 ~ 20268266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207223
ttgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattgataaaataataataataatacaaaataataaagtgtccagggaaagtgtccaaataaaaggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggggaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctccgggcggcagagtgggatgagctctgtgttcacggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacagtATTTA
>TU207225
ttgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattgataaaataataataataatacaaaataataaagtgtccagggaaagtgtccaaataaaaggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggagaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctccgggcggcagagtgggatgagctctgtgttcacggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacagtATTTA
>TU207226
ttgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattgataaaataataataataatacaaaataataaagtgtccagggaaagttgtccaaataaaaggggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggggaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctccgggcggcagagtgggatgagctctgtgttcacggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacagtATTTA
>TU207227
ttgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattgataaaataataataataatacaaaataataaagtgtccagggaaagtgtccaaataaaaggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggagaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctccgggcggcagagtgggatgagctctgtgttcacggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacagtATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207223 False 631 lncRNA 0.61 2 20266668 20268266
TU207225 False 631 lncRNA 0.60 2 20266668 20268266
TU207226 True 634 lncRNA 0.61 2 20266668 20268266
TU207227 False 631 lncRNA 0.60 2 20266668 20268266

Neighbor

gene id symbol gene type direction distance location
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding downstream 2818 20258253 ~ 20263850 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding downstream 24357 20230975 ~ 20242311 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding downstream 36847 20173548 ~ 20229821 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding downstream 195391 20069406 ~ 20071277 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 417623 19827100 ~ 19849045 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 25028 20293294 ~ 20296159 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 33140 20301406 ~ 20304874 (-)
LOC122324455 slc35d3,LOC107727602,LOC107676236,LOC107675071,LOC107717122 coding upstream 38373 20306639 ~ 20311285 (-)
pex7 pex7,LOC107727680,LOC107676274 coding upstream 43158 20311424 ~ 20328698 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC107598074 coding upstream 62424 20330690 ~ 20334913 (-)
G140304 NA non-coding downstream 98670 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 357021 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 465000 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 526305 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 817956 19445828 ~ 19448712 (-)
G140328 NA non-coding upstream 18214 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 358389 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 468322 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 724255 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 728100 20996366 ~ 20996681 (-)
G140277 cad,LOC107602171 other downstream 203691 20061602 ~ 20062977 (-)
G140227 cad other downstream 207065 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 651466 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 962700 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 1003716 19261466 ~ 19262952 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 142363 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 366030 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 699922 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 821138 21089404 ~ 21091008 (-)
G140616 NA other upstream 930444 21198710 ~ 21278741 (-)

Expression


Co-expression Network