LOC122324291


Basic Information

Item Value
gene id LOC122324291
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20673461 ~ 20674389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207375
GTCCAAAGCCCTCTAACCCTTCCAGCTAATGCTGCTGTGCTAATAACACACAGAGGAAACTAGCGGAAGGCATCATGGTGAACTTCGCAGCAGCTATTCGTGAGCACTGGGTCAATATTCTGGTCCCGCTGGGTTTCGTAATCGGGGTTTATCTGGACCGTTGGAATGACCAGAAACTCACAGCATACAGGAACAAGAGTGCTTTATACAGCAGGGAACTGAAGCCTGGCGAGGAATACACCTGGAAGTGAGACTCCTGCAGTGATATTTATGGACCCCCTGTCTAGAATGTGTATATTGTCTCTTGTTGCAAGGATGTTGTCCCAAtaaattttctgtttaattctGTAATGCCTTGT
>XM_043218602.1
AGAAAATGGAAAATTGTAGCAACTCCCTTCAAACTGTCATGTTGATACAGTTGGTACAGTCCAAAGCCCTCTAACCCTTCCAGCTAATGCTGCTGTGCTAATAACACACAGAGGAAACTAGCGGAAGGCATCATGGTGAACTTCGCAGCAGCTATTCGTGAGCACTGGGTCAATATTCTGGTCCCGCTGGGTTTCGTAATCGGGGTTTATCTGGACCGTTGGAATGACCAGAAACTCACAGCATACAGGAACAAGAGTGCTTTATACAGCAGGGAACTGAAGCCTGGCGAGGAATACACCTGGAAGTGAGACTCCTGCAGTGATATTTATGGACCCCCTGTCTAGAATGTGTATATTGTCTCTTGTTGCAAGGATGTTGTCCCAAtaaattttctgtttaattctGTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003954 NADH dehydrogenase activity molecular_function

KEGG:

id description
K03957 NDUFB1; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU207375 False 359 lncRNA 0.46 3 20673519 20674389
XM_043218602.1 True 409 mRNA 0.45 3 20673461 20674381

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2,LOC107598075,LOC107675094,LOC107676251,LOC107727645,LOC107716823 coding upstream 300396 20370525 ~ 20373065 (+)
esco2 LOC107676264,LOC107727663,LOC107716790,LOC107598071,LOC107675113,LOC107602168 coding upstream 372479 20296392 ~ 20300982 (+)
scara3 LOC107727629,LOC107602199,LOC107676248,LOC107716757,LOC107598072,LOC107675062 coding upstream 393741 20269679 ~ 20279720 (+)
reps1 LOC107602201,LOC107727647,LOC107676255,LOC107675060,LOC107598066,LOC107716724 coding upstream 416162 20242440 ~ 20257299 (+)
msra msra,LOC107716713,LOC107676239,LOC107727624,LOC107602205,LOC107598064 coding upstream 505463 20108530 ~ 20167998 (+)
extl3 LOC107745900,LOC107704067,LOC107548434,LOC107559127,LOC107669453 coding downstream 6699 20681088 ~ 20703778 (+)
kif13bb LOC107704069,LOC107745913,LOC107548409,LOC107669436 coding downstream 43698 20718087 ~ 20745144 (+)
LOC122324653 LOC107745896,LOC107719382,LOC107669439,LOC107704072,LOC107559130,LOC107548431 coding downstream 87190 20761579 ~ 20788352 (+)
col12a1b LOC107548430,LOC107704073,LOC107559129,LOC107719381,LOC107669442 coding downstream 119321 20793710 ~ 20860068 (+)
naa20 naa20,LOC106571266 coding downstream 290944 20965333 ~ 20967759 (+)
G140406 NA non-coding upstream 39657 20632724 ~ 20633804 (+)
G140381 clvs2,LOC107675107 non-coding upstream 57248 20564340 ~ 20616213 (+)
G140379 NA non-coding upstream 72084 20553100 ~ 20601377 (+)
G140356 NA non-coding upstream 279521 20391605 ~ 20393940 (+)
G140136 hey2,LOC107717129,LOC107598074,LOC107727582,LOC107676222 non-coding upstream 341397 20302947 ~ 20332064 (+)
G140506 crnkl1,LOC107669451,LOC107559132,LOC107704074,LOC107548429 non-coding downstream 298189 20972578 ~ 20973569 (+)
G140523 NA non-coding downstream 352611 21027000 ~ 21027469 (+)
G140673 NA non-coding downstream 755463 21429852 ~ 21430052 (+)
G140686 NA non-coding downstream 760204 21434593 ~ 21434796 (+)
G140708 NA non-coding downstream 808238 21482627 ~ 21483277 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 81302 20554113 ~ 20592159 (+)
ift172 ift172,LOC107716708,LOC107676240,LOC107727571,LOC107675043,LOC107602169 other upstream 570923 20071974 ~ 20102538 (+)
LOC122325503 galnt14,LOC107675076,LOC107716567,LOC107727639,LOC108429358,LOC107676246 other upstream 797083 19769924 ~ 19876378 (+)
LOC122324993 ift172,LOC107716708,LOC107676240,LOC107727571,LOC107602169,LOC107675043 other upstream 995769 19651782 ~ 19677692 (+)
mpv17 mpv17,LOC107716659,LOC107602210 other upstream 1075818 19577330 ~ 19597643 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other downstream 115487 20789876 ~ 20791703 (+)
G140533 NA other downstream 427379 21101768 ~ 21102510 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other downstream 494386 21168775 ~ 21201962 (+)
G140785 NA other downstream 1169757 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 1797372 22471761 ~ 22476774 (+)

Expression


Co-expression Network