G140449



Basic Information


Item Value
gene id G140449
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20736588 ~ 20791701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU207403
tgtttgtttatgataggcacagtttatttaattcaaaccaCTTTGGTCCCTTTCacctttcaaattaaataaatatactgtgtgAAACACTCATAACGTCACATTCCCACAGAAATGGGCCAGAAAGGATGGCAAGAGCCGACATCAGTTCTTCTTCTGAGGGAGGGCTGCCCTCAGTAGCTCATATATGACATATACAACCCATAGTTGAACGGTAAAGAACAGCATCAAAGACTCCTCCCTTCAGATGAACTGGCATCCCATTGGTCTcctaaatacaaaacacaaatcaacATTTCGATAAGCGCctataaaaaatgataaaacacactCCCGAGAACAAAGCAAGGTCTGAAGCATTATATACCTTTAGAGAGAACGCAGATGATTGGTAAAGATATCGGGGGAACATTAGCTCATTTGACagattacaaaaacacattacagaAAAGTGAAATCCACACCTGGAAGAGTTTCTGTTTGTCTGGCACCTTGTTGACCAGCTGCCTGCGGACGGTGCTGGAGATCTGCCGTCTGGAGACCTGCTGCAGAGTcttcaaaagcaGAAAGTGTCGAAACATTTTCGGTGCTGGTGACTGAAGAGTCACAAGACAGAGAGGAAAACAGAAGCGGCGTGAAGAGAGACGTCTCCGCCTGCTGGTCTGGAGAGCATCTGCCTAGCTGTTCCt
>TU207404
tgtttgtttatgataggcacagtttatttaattcaaaccaCTTTGGTCCCTTTCacctttcaaattaaataaatatactgtgtgAAACACTCATAACGTCACATTCCCACAGAAATGGGCCAGAAAGGATGGCAAGAGCCGACATCAGTTCTTCTTCTGAGGGAGGGCTGCCCTCAGTAGCTCATATATGACATATACAACCCATAGTTGAACGGTAAAGAACAGCATCAAAGACTCCTCCCTTCAGATGAACTGGCATCCCATTGGTCTcctaaatacaaaacacaaatcaacATTTCGATAAGCGCctataaaaaatgataaaacacactCCCGAGAACAAAGCAAGGTCTGAAGCATTATATACCTTTAGAGAGAACGCAGATGATTGGTAAAGATATCGGGGGAACATTAGCTCATTTGACagattacaaaaacacattacagaAAAGTGAAATCCACACCTGGAAGAGTTTCTGTTTGTCTGGCACCTTGTTGACCAGCTGCCTGCGGACGGTGCTGGAGATCTGCCGTCTGGAGACCTGCTGCAGAGTcttcaaaagtgttttgaaatacaTGGGATACATTAATTTCATGCACTGGATCAAACATGTTCTAAATTATATAACACAAATTACGTAGAAAATGTTTGTTCCAGTAGTTTAATGCATGTATTGGTCTAATTACCTAATACCGTGtcacactaccattcaaaggtttgggctCAATTAtcttatttgaatttttttgaaggaagtctcttctgctcaccaaagcttaatttaactgataaaaaaacgcagtacagtataaacagtaataaaattaaaacaatcttACAGACCTCAAACTTCTGAACACTAATCTACAgtctaaaaaaaatgcataaataagaGAGGATCATGATGCTCTTCACGTACCCCTGGGATATTTGAGACGATCTCAAACGTGACTCCACAGCCGTGAGTTGAGCTGCGGTGAGACATTCTCCTCAGCAGACTTTGAGCAAAGCCCTGCAGGAAGAGATCAGATCGATAAAAGGGCACTCAATAAAAAACACGAAAATCAGTCAATCACGCACCTGTCGTCCGGTGAGGGTCACACAGATCCGTTTGCGCAGGACCAGCTGCATTTGTGCAGGATGACTGAGCAGAACCATGGTGCGGACGGTGAGGTAGATCCTGTGATCCGGCCCCGTCGCTCGGTTCAGCTCAGGACTGTCATGAACGGTGCAGTCCCATGATGCCTCTGCCTTCACCTGTGGGAGGAGAGCGAGTTCTTCATGTAATGTGGTGCAGTTTTCTGTCTCACTGAGAAGCAAAATACTCTCCTCACCTCTTTCTCATAGTACTTGACGATCTGTAAGTCCATGAAATCATCTTTATCTTCTCTGTCGAGCGCAGCATCCAGACCTCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU207403 False 689 lncRNA 0.44 3 20789906 20791701
TU207404 True 1416 lncRNA 0.42 3 20736588 20791701

Neighbor


gene id symbol gene type direction distance location
ints9 ints9 coding downstream 18491 20706925 ~ 20718097 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding downstream 55767 20674997 ~ 20680821 (-)
cpsf2 cpsf2,LOC107704064,LOC107669458 coding downstream 63468 20661011 ~ 20673120 (-)
fabp7b fabp7b,fabp7,LOC107675216,LOC107602177,LOC107717149,LOC107675046,LOC102218712 coding downstream 102806 20632717 ~ 20633782 (-)
smpdl3a smpdl3a,LOC107727613 coding downstream 104081 20626973 ~ 20632507 (-)
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding upstream 153936 20945637 ~ 20964922 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding upstream 288103 21079804 ~ 21082714 (-)
LOC122324706 NA coding upstream 362684 21154385 ~ 21168059 (-)
tram2 tram2,LOC107593275,LOC107721446 coding upstream 459047 21250748 ~ 21256606 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 467832 21259533 ~ 21264967 (-)
G140413 NA non-coding downstream 109725 20626655 ~ 20626863 (-)
G140328 NA non-coding downstream 449593 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 468322 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 568590 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 826941 19905631 ~ 19909647 (-)
LOC122324961 NA non-coding upstream 200820 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 204665 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 254124 21045825 ~ 21049976 (-)
G140592 NA non-coding upstream 291593 21083294 ~ 21083559 (-)
G140615 NA non-coding upstream 408936 21200637 ~ 21201961 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 78208 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 194339 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 673611 20061602 ~ 20062977 (-)
G140227 cad other downstream 676985 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 1121386 19601532 ~ 19615202 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 176487 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 297703 21089404 ~ 21091008 (-)
G140616 NA other upstream 407009 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 691891 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 715543 21507244 ~ 21512483 (-)

Expression



Co-expression Network