G140817


Basic Information

Item Value
gene id G140817
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21549084 ~ 21552231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU207896
CTGAGCAGGGCTTAGAATGTGAAATCGAGCGTTTCCGGTGCATGTTAAATCCAGGAGAGGGGCTTCCGGCTGGAGAACACGGCTGCAGCTTTGAGGAAATCAACCTGGTTTTTCCACGACCCCGTGGGAACCCTGTCGATCCTTCCTCCAGCCAATCAGCCGCCCCGGCCTCCCGTCCAGAACCCTGATCAGaatcacaaagacacacacatacagtaagaCATGCAGATAGAAAGAGAGACGTCCCTCTCAGCTCTCGTCTTGAAAGCTCAGGGTGAGCGATCGCAAAGCCCCGTCCGTTCTGGCTCCCATCATTCGAGGTGCGTGCGGCTCTACTCCTGGATCGGACCCGTGCGGGTCAGTACGAACACACTGAGGTCGACAGACGGTTTTGGAAGCagcaaaatgaattaaaataactagCTCAACCAGCCTCGGGTGTCGAGTGAGGCGATGTTATTCAGTGCTGTTGATGGCAGTTATCAAAGTGTCTCCACTGTCCTGAGGAgcagagagcaagagagagagagagaaagggcgAATCATGTTACTAATGTTGGTGGGTCTACTCCCGCGTTCCCGTTTTGTCCTGCTTCATCAGATCACAGGCAGGATTTCTTCTGGTTGAAGGTTTGATCATCTCCCCCCTTCTTCCTCGGTCCGTGAAGGATTGATTGACTATTGTTTATCCCTTGACGGGGGCGGGAATATAGTACGTCCAAGTATCATTCTTGggctgttgccatggtgatgtTCTGTGGGTGTGGCAAGCTGTGGGACCCTGAGGATGCCAGAGAGAGGGCGGAGCTTGAGGAGGAAATGACTTGCTGAGACTGacacctgaaaaaaaatataatctcGTTATTTTGGGGCCGACAGCATAATATAATTGCCTGAACGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207896 True 902 lncRNA 0.52 3 21549084 21552231

Neighbor

gene id symbol gene type direction distance location
rab10 rab10,LOC107593269,LOC107697207,LOC102798439 coding downstream 18638 21516779 ~ 21530446 (-)
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding downstream 233757 21305710 ~ 21315327 (-)
prdm1c NA coding downstream 274846 21265415 ~ 21274238 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding downstream 284117 21259533 ~ 21264967 (-)
tram2 tram2,LOC107593275,LOC107721446 coding downstream 292478 21250748 ~ 21256606 (-)
gnpat2 si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372 coding upstream 78039 21630270 ~ 21639546 (-)
lpin1b si:ch73-21k16.1,LOC107708326,LOC107593263,LOC107685350 coding upstream 88098 21640329 ~ 21655564 (-)
fez2b si:ch211-57i17.1,LOC107708323,LOC107685354,LOC107719364,LOC107550411 coding upstream 138187 21690418 ~ 21697694 (-)
wdr26b wdr26b,LOC107697199,LOC107708322,LOC107685355 coding upstream 147175 21699406 ~ 21713062 (-)
LOC122324966 LOC107685373,LOC107593287,LOC107708319 coding upstream 161253 21713484 ~ 21730228 (-)
G140808 NA non-coding downstream 65784 21482618 ~ 21483300 (-)
LOC122324488 NA non-coding downstream 71226 21437692 ~ 21477858 (-)
G140688 NA non-coding downstream 113026 21435797 ~ 21436058 (-)
G140687 NA non-coding downstream 113615 21434944 ~ 21435469 (-)
G140683 NA non-coding downstream 116990 21431806 ~ 21432094 (-)
G140826 NA non-coding upstream 15402 21567633 ~ 21568360 (-)
G140824 NA non-coding upstream 24607 21576838 ~ 21671924 (-)
G140807 NA non-coding upstream 146189 21698420 ~ 21699275 (-)
G140859 LOC107593260 non-coding upstream 175422 21727653 ~ 21768597 (-)
G140801 NA non-coding upstream 218799 21771030 ~ 21774369 (-)
LOC122324936 NA other downstream 36601 21507244 ~ 21512483 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other downstream 43429 21483592 ~ 21505655 (-)
G140616 NA other downstream 270343 21198710 ~ 21278741 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 458076 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 573329 20968188 ~ 20975755 (-)
batf batf,LOC107697118 other upstream 180313 21732544 ~ 21741077 (-)
G140883 NA other upstream 288882 21841113 ~ 21841468 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other upstream 290201 21842432 ~ 21844633 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other upstream 292983 21845214 ~ 21846917 (-)
G140972 NA other upstream 560371 22112602 ~ 22113044 (-)

Expression


Co-expression Network