LOC122325422


Basic Information

Item Value
gene id LOC122325422
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21962196 ~ 21964129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU208020
tcaCCTGTATATGGAATAGCTTTACGGCttcctaattttttttaacattatttttcttttatttaattttttaaatttgaatgaagTAATATCACAGGCTTCCATATACAGGCTCGATAATATCAATATTTGTCAACCCTTTGGACACACCAGCACTAaattacagcaaaataaaaattggtaACAGCCCATCCCCACTTTATTTTCTGACTCTGACATGGTGGCTCAGTGGTTAGCACTGTGGCCTCACAGCAAGAAGGTCCCTGGACCTTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTCATGCCCAAGACATGCAGAGATATATTGTAGTGTCAGGCCATCCCCCAAACTTGGACCCTAAAAGGATGTATAAGGAGAGCAACACTGACAACGGTGTGGAGAGGGGTCAAAACCTTGGACCATATGATGAACAGgTGTCTCTTGTTGGTCTGGAGCAAGAATATTGTTACAGGCGACACAGTAGTGAAAAGTGAAAGCATCTGTTTCAAGCGCCTCCAGACTACAAACCGCACTTTTGGGTCAGGAGTTTGTGTCTTGCCGAAGAgAGCCTGAAACCCCCTGCACCTTACACCATCCTTCAGCGTCATGTTGAACCATCTCCAGACGACATCCTTTTGGATCAAACCCCCACCTAGATCTCCCctcataaattataaaatgttggAATTCTAAATAAATTCTTAAGGTCTTCCCAG
>TU208021
TCTGGAATCATAATGACGGCTAAACATAATCTAaaagatcttaaaaaaaaaaatctatttgccatttttctaaatgaaaagaATAGTTTAATCTACCATATCAACCCAGACAACATCATCTTTGAAAAAGATGATATTGCTAGAATTAAAGTTAGTAATAATATCGATCAACATCCAAatgcatcgtttttttttttacaaattaaacataGGGAATTTTGAAAGAGTAGAATGTACTAAAATAGATTcactaacagaaaaaaaactaaaggagaatttttatctttttgataATGAGTTTGCTTTTGACAAAACAGGTGAAGCTGGAGATAGTGACTCCTGGTTAAACCGGTAGATATAGACTCCTGTTTTTACCAGTTCTGGTAAATGTGTTGGCATGTATGTCCAacaattagtaaataaaaagaattcaCCTGTATATGGAATAGCTTTACGGCttcctaattttttttaacattatttttcttttatttaattttttaaatttgaatgaagTAATATCACAGGCTTCCATATACAGGCTCGATAATATCAATATTTGTCAACCCTTTGGACACACCAGCACTAaattacagcaaaataaaaattggtaACAGCCCATCCCCACTTTATTTTCTGACTCTGACATGGTGGCTCAGTGGTTAGCACTGTGGCCTCACAGCAAGAAGGTCCCTGGACCTTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTCATGCCCAAGACATGCAGAGATATATTGTAGTGTCAGGCCATCCCCCAAACTTGGACCCTAAAAGGATGTATAAGGAGAGCAACACTGACAACGGTGTGGAGAGGGGTCAAAACCTTGGACCATATGATGAACAGGTTAGTGCTGGCTTGTTGCATACTCCATCCCACTTGTTCCATCCATACtgtcattacattaaatattttaaattaaatgaacaggTGTCTCTTGTTGGTCTGGAGCAAGAATATTGTTACAGGCGACACAGTAGTGAAAAGTGAAAGCATCTGTTTCAAGCGCCTCCAGACTACAAACCGCACTTTTGGGTCAGGAGTTTGTGTCTTGCCGAAGAgAGCCTGAAACCCCCTGCACCTTACACCATCCTTCAGCGTCATGTTGAACCATCTCCAGACGACATCCTTTTGGATCAAACCCCCACCTAGATCTCCCctcataaattataaaatgttggAATTCTAAATAAATTCTTAAGGTCTTCCCAG
>XR_006247296.1
aaagaattcaCCTGTATATGGAATAGCTTTACGGCttcctaattttttttaacattatttttcttttatttaattttttaaatttgaatgaagTAATATCACAGGCTTCCATATACAGGCTCGATAATATCAATATTTGTCAACCCTTTGGACACACCAGCACTAaattacagcaaaataaaaattggtaACAGCCCATCCCCACTTTATTTTCTGACTCTGACATGGTGGCTCAGTGGTTAGCACTGTGGCCTCACAGCAAGAAGGTCCCTGGACCTTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTCATGCCCAAGACATGCAGAGATATATTGTAGTGTCAGGCCATCCCCCAAACTTGGACCCTAAAAGGATGTATAAGGAGAGCAACACTGACAACGGTGTGGAGAGGGGTCAAAACCTTGGACCATATGATGAACAGgTGTCTCTTGTTGGTCTGGAGCAAGAATATTGTTACAGGCGACACAGTAGTGAAAAGTGAAAGCATCTGTTTCAAGCGCCTCCAGACTACAAACCGCACTTTTGGGTCAGGAGTTTGTGTCTTGCCGAAGAgAGCCTGAAACCCCCTGCACCTTACACCATCCTTCAGCGTCATGTTGAACCATCTCCAGACGACATCCTTTTGGATCAAACCCCCACCTAGATCTCCCctcataaattataaaatgttggAATTCTAAATAAATTCTTAAGGTCTTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208020 False 720 lncRNA 0.42 5 21962196 21963699
TU208021 True 1234 lncRNA 0.37 4 21962196 21964129
XR_006247296.1 False 726 lncRNA 0.42 5 21962197 21963706

Neighbor

gene id symbol gene type direction distance location
LOC122325511 taar12f,taar12e,LOC107706946,LOC107550397,LOC107550396,LOC107697103,LOC107721014 coding downstream 25737 21935374 ~ 21936459 (-)
taar11 taar11,LOC107550378,LOC107697081,LOC107733375 coding downstream 43392 21917818 ~ 21918804 (-)
LOC122325446 taar13e,LOC107719422,LOC107550389,LOC107697109,LOC107593251,LOC107685383,LOC107697111 coding downstream 74673 21886498 ~ 21887523 (-)
taar13a taar64,taar13b,LOC107719423,LOC107697110,LOC107550388,LOC107697111,LOC107719422,LOC107697109 coding downstream 77768 21883406 ~ 21884428 (-)
LOC122325436 taar13c,taar13e,LOC107593251,LOC107685383,LOC107697111,LOC107550387,LOC107719422,LOC107697109 coding downstream 82017 21879154 ~ 21880179 (-)
bmp2b bmp2b,LOC107742710,LOC107685371,LOC107593250 coding upstream 37084 22001213 ~ 22006248 (-)
chgb LOC107593248,LOC107667615,LOC107756670,LOC107742709 coding upstream 88928 22053057 ~ 22058826 (-)
gzf1 LOC107667619,LOC107600081,LOC107593244,LOC107742706,LOC107756665,LOC107697078 coding upstream 127943 22092072 ~ 22097205 (-)
atad2b atad2b,LOC107697175,LOC107667607,LOC107750077,LOC107742719,LOC107603081 coding upstream 430706 22394835 ~ 22470270 (-)
LOC122324950 LOC107667618,LOC107600078,LOC107750074,LOC107603106,LOC107726759 coding upstream 534616 22498745 ~ 22505802 (-)
G140901 NA non-coding downstream 52837 21908991 ~ 21909359 (-)
G140888 NA non-coding downstream 117175 21844794 ~ 21845021 (-)
G140885 NA non-coding downstream 119851 21842126 ~ 21842345 (-)
G140884 NA non-coding downstream 120162 21841762 ~ 21842034 (-)
G140882 NA non-coding downstream 121431 21840515 ~ 21840765 (-)
G140940 NA non-coding upstream 75436 22039565 ~ 22041112 (-)
LOC122325129 NA non-coding upstream 97443 22061572 ~ 22067308 (-)
G140964 NA non-coding upstream 117395 22081524 ~ 22082617 (-)
G140967 NA non-coding upstream 133777 22097906 ~ 22098339 (-)
G140969 NA non-coding upstream 141840 22105969 ~ 22106281 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other downstream 115279 21845214 ~ 21846917 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other downstream 117563 21842432 ~ 21844633 (-)
G140883 NA other downstream 120728 21841113 ~ 21841468 (-)
batf batf,LOC107697118 other downstream 221119 21732544 ~ 21741077 (-)
LOC122324936 NA other downstream 449713 21507244 ~ 21512483 (-)
G140972 NA other upstream 148473 22112602 ~ 22113044 (-)
mcm9 mcm9,LOC107678857,LOC107549683,LOC107743310,LOC107697136,LOC107727573,LOC107603056 other upstream 1420442 23384571 ~ 23401391 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other upstream 1821623 23785752 ~ 23823050 (-)
G141502 NA other upstream 2040558 24004687 ~ 24006665 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other upstream 2290264 24254393 ~ 24517743 (-)

Expression


Co-expression Network