fkbp1b (fkbp1b)


Basic Information

Item Value
gene id fkbp1b
gene name fkbp1b
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22506727 ~ 22517683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU208163
CGGAGTGCAGTAGAGCCGCTGTCTCacagtctgtctctctctctcactactGTAGGATCTACCCGCGCTAACAGAATGGGTGTCGAGGTTGAAACAATATCTCCAGGAGACGGAAGAACTTTTCCGAAGAAAGGACAGACATGCGTCGTGCATTATATAGGGATGCTGCAGAACGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCGTTCAAATTCAAGATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGAGTCGCACAGATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGATATGGCTTACGGGGCCACGGGACACCCTGGTGTCATTCCTCCTAATGCCACTCTTATATTTGACGTGGAGCTGCTGAAACTGGAGTGAACCGCTAGCTTCTGCAGGGCCGAAGTCCTCAAATGGAGAGGGAGAAACACGAGTCCCCGCCCCACCAACAAAACCTTCTTCATCTAGACGCTCTCCGCATCAaacttgtgtgtttttgccAATAAATGCAATGTGAAATCTTTCTACACATTAACGCTATTTTGGCATCATGTTACATGCAAAgcgtattttttttctttttcatattacACTTTCCTGAAACTATGTGAATACAATAGGATCATTCAatcagtattttaatttataccaGACCGAATCCACCGCCTTGGCGAATTTGGTAGGGTTAGTATTTTACAGGAGGGTGTAATGGTTTATAATTCTGTATTCTGAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATAAAAGTATATCCTGCTGAACGCATATGATAAAATGATAATGTTACtgtatttactattatattttatatataagtcTATCCCTTATAAACATTTGCTGCAAGTCTCATTCGGATCTTTAAACATGAGACGTGGAACAAACTGATTATGTACCGTGGAGTGCTTTGGcttcaattaacattttatcaaCTTGCTCTTAATAAAGATATTTGAACT
>XM_043220511.1
CCCCGAGGGCGCGTACAGTTAGATTTGATATGACAGTGGGCGGAGTGCAGTAGAGCCGCTGTCTCacagtctgtctctctctctcactactGTAGGATCTACCCGCGCTAACAGAATGGGTGTCGAGGTTGAAACAATATCTCCAGGAGACGGAAGAACTTTTCCGAAGAAAGGACAGACATGCGTCGTGCATTATATAGGGATGCTGCAGAACGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCGTTCAAATTCAAGATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGAGTCGCACAGATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGATATGGCTTACGGGGCCACGGGACACCCTGGTGTCATTCCTCCTAATGCCACTCTTATATTTGACGTGGAGCTGCTGAAACTGGAGTGAACCGCTAGCTTCTGCAGGGCCGAAGTCCTCAAATGGAGAGGGAGAAACACGAGTCCCCGCCCCACCAACAAAACCTTCTTCATCTAGACGCTCTCCGCATCAaacttgtgtgtttttgccAATAAATGCAATGTGAAATCTTTCTACACATTAACGCTATTTTGGCATCATGTTACATGCAAAgcgtattttttttctttttcatattacACTTTCCTGAAACTATGTGAATACAATAGGATCATTCAatcagtattttaatttataccaGACCGAATCCACCGCCTTGGCGAATTTGGTAGGGTTAGTATTTTACAGGAGGGTGTAATGGTTTATAATTCTGTATTCTGAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATAAAAGTATATCCTGCTGAACGCATATGATAAAATGATAATGTTACtgtatttactattatattttatatataagtcTATCCCTTATAAACATTTGCTGCAAGTCTCATTCGGATCTTTAAACATGAGACGTGGAACAAACTGATTATGTACCGTGGAGTGCTTTGGcttcaattaacattttatcaaCTTGCTCTTAATAAAGATATTTGAACTCTTTGAAA

Function

symbol description
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1B isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU208163 False 1006 TUCP 0.43 4 22506767 22517675
XM_043220511.1 True 1054 mRNA 0.43 4 22506727 22517683

Neighbor

gene id symbol gene type direction distance location
mfsd2b si:dkeyp-115a10.3,mfsd2b,LOC107750078,LOC107697177,LOC107603080,LOC107667608 coding upstream 8119 22478061 ~ 22498608 (+)
LOC122325512 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 112293 22285647 ~ 22394434 (+)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 347799 22150436 ~ 22158928 (+)
napbb si:rp71-81o21.2,napb,LOC107756672,LOC107667620,LOC107742707,LOC108411873,LOC107593246,LOC103023605,LOC106571745,LOC106610947,LOC100691502 coding upstream 414945 22085016 ~ 22091782 (+)
gpcpd1 gpcpd1,LOC107593247,LOC107742708,LOC107756671,LOC107697181 coding upstream 424110 22067984 ~ 22082617 (+)
mmut mut,LOC107726757,LOC107697172,LOC107726528,LOC107667609 coding downstream 482 22518165 ~ 22537861 (+)
runx2b runx2b,runx2,LOC107678859,LOC107726745,LOC107697170,LOC107603075 coding downstream 104705 22622388 ~ 22662318 (+)
mark3b mark3b,LOC107697167,LOC107743287,LOC107678848,LOC108412004,LOC107726756 coding downstream 168889 22686572 ~ 22738127 (+)
laptm4a laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288 coding downstream 221950 22739633 ~ 22744277 (+)
ttc32 ttc32,LOC107678832,LOC107743292,LOC107697098 coding downstream 238309 22755992 ~ 22757979 (+)
LOC122324401 NA non-coding upstream 391860 22098405 ~ 22114867 (+)
G140933 NA non-coding upstream 405266 22101238 ~ 22101461 (+)
G140931 NA non-coding upstream 408435 22097911 ~ 22098292 (+)
G140922 NA non-coding upstream 445194 22061063 ~ 22061533 (+)
G140905 NA non-coding upstream 528179 21933984 ~ 21978548 (+)
G141081 NA non-coding downstream 23435 22541118 ~ 22541327 (+)
G141084 NA non-coding downstream 24453 22542136 ~ 22542532 (+)
G141091 NA non-coding downstream 39546 22557229 ~ 22557502 (+)
G141121 NA non-coding downstream 403010 22920693 ~ 22923128 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 548904 23066587 ~ 23073665 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 29953 22471761 ~ 22476774 (+)
G140785 NA other upstream 662026 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 1304765 21168775 ~ 21201962 (+)
G140533 NA other upstream 1404217 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1715024 20789876 ~ 20791703 (+)
matn3a matn3a other downstream 226729 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 325122 22842805 ~ 22860327 (+)
pln NA other downstream 826032 23343715 ~ 23351655 (+)
G141475 NA other downstream 1555188 24072871 ~ 24074423 (+)
G141524 NA other downstream 1922560 24440243 ~ 24493381 (+)

Expression


Co-expression Network