XLOC_000677 (osbp)


Basic Information

Item Value
gene id XLOC_000677
gene name osbp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52662203 ~ 52699063 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001147
GGCATTTAGGCACATGCATTAATCAGATTCTGCCcggtgtgtgtgttgtgtttagaTGGAAAAGCGGCATGAATGTGACTTTTATGCGAGTTTAGTGTGGAGTAAAACTCGCTCGTCTGATCTCATGTCACCGACTTCCTTCTTCAGAGGGGATCATTGAGAGATCAGACCCCCTTCAGACACTGTGAAGCCAAGGGCTGTCGTGATGTCGGAGCCCAAAGCGCCCACCCCGGCCCCTGGAGACACCTATAAAGGCTGGCTCTTCAAATGGACTAATTACATCAAGGGATACCAAAGGCGATGGTTCGTCCTGAGCAATGGCTTACTGTCTTACTACAGGACTCAGGCGGAGATGGGGCACACATGTCGAGGCACCATAAACCTGGCCACGGCCAATATTGCGGTTGAGGACTCGTGCAACTTCGTGATCTCCAATGGCGGCACGCAGACGTATCACCTGAAGGCCAGCTCAGAGGTGGAGCGGCAGCGCTGGATCACAGCACTCGAGCTCGCCAAAGCCAAAGCTTTCCGCATGCAGGCCGAGTCGGATGATTCAGGAGATGAGTCAACTCCTCCTGCGGCGGGTCAGGGTGGAGGAGCTCGTAACTCAGAGGTTCAGTCAACGCTCCGCACATTGGGCAGCAAAGTGGAGGATCTGAGCACCTGCAACGACCTCATCGCCAAACACGGCTCTGCACTGCAGCGGTCCTTGTCTGAGCTGGAGGGTGTTCGGCTGGGAGGAGAGACGAGTGAAAAGATTCGCCAGGTGACGGAGCGAGCCACACTCTTCCGCATCACCTCCAACGCCATGATCAACGCCTGCCGGGACTTCCTAGCGTTGGCACAGGCTCACAGTAAGCGCTGGCAGAAAGCCCTGCAGGCCGAGAGAGAGCAGAGAGTGAGGCTGGAGGAGACGCTGGAGCAGCTCGCCAAACAACACAACCATCTAGAAAGAGCCTTCAGGGGAGCCACTGTCCTGCCTCCATCACAGAGCAACCCTGCCATAGACAGCAAAGGCTCAGTTCCAGGAAAGGGTGACGCCAGTGACGAGGATGAGGAGAATGAATTTTTTGATGCCTGCGAGGATGTTCAGGAGTTCATCACTGTACCAGCAGACCCCAAATATCACAGGAGATCCGGCAGCAATGTCAGCGGGATCAGTAGCGAAATGGGAATGGATGACGGGACGACGTCGctgGACGAACAGTCTATGGCATCCAATCCCGAGTCTCCTCAATCCCAAGAGGTAGTGCCTGTGAGGAAAAGACGGACCCGAATCCCAGATAAACCAAATTACTCTCTCAATCTGTGGAGCATCATGAAGAACTGTATTGGAAAAGAGCTGTCCAAAATCCCAATGCCTGTGAACTTCAACGAGCCGCTCTCCATGCTGCAGCGTCTCTCTGAGGATCTGGAGTACTATGAGCTGCTGGATCGAGGAGCAAAGTGCCAGAGCTCTCTGGAGCAGATGTGTTACGTGGCCGCTTTCACCGTGTCATCGTACTCCACTACAGTTCACCGCACCGGCAAACCCTTCAACCCGCTGCTGGGAGAGACCTTTGAGCTGGACCGCCTGCAGGAGAGCGGGTACAGGTCCCTCTGTGAGCAGGTAAGCCATCATCCTCCAGCTGCTGCCCATCATGCGATCTCTGAGCGAGGCTGGACCCTGAGACAGGAGATCGCGCTGGCCAGCAAGTTCAGGGGCAAATACCTCTCCATTATGCCTCTGGGTTCTATTCACTGTATCTTTGAGAAGAGCAACAATCACTACACCTGGAAGAAAGTCACAACCACAGTGCACAATATCATAGTCGGGAAACTCTGGATAGATCAGTCAGGAGAAATAGACATCGTGAACCACAGAACGGGCGACCGCTGCCATCTCAAATTCGCCCCATACAGCTACTTCTCCAGAGACGTGGCCAGAAAGGTCACAGGGGTGGTGACGGATAAAGATGGGAAAGCACACTATGTTCTGTCCGGCACGTGGGATGAGAAGATGGAGTGCTCTCGGGTCATGCAGAGCAGTAGAGGAGGAGAGAACGGAGCCGATGGACGACAGAAAACCGTCTATCAGACACTCAAAGCCAAAGAGCTGTGGAGGAAGACACCGCTGCCGGAGGGCGCTGAAAACATGTACTACTTCTCAACGCTGGCGCTGACGCTAAATGAGCCGGAGGAAGGCGTCGCTCCCACGGACAGCAGAAAGCGGCCGGATCAGCGTCTGATGGAGCAGGGCCGCTGGGAGGAGGCCAACGCTGAGAAACAGAGGCTGGAGGAAAAACAGCGCACGGCCCGaagagagcgagagcgagaggCCAACCGCTCCGCCAACCCTGAGGAGGGCGGACACCAGGACAGCTATAAGGCGATGTGGTTCGATCGGTGTGTGGATCCGATGACCGGAGAGCCCACGCACATCTACAGAGGAGGATACTGGGAGACAAAAGAGCAGGGAAACTGGGACTCCTGCCCAGATATCTTCTGA
>TCONS_00001148
GCTGAAGAAGTCGAGATTGCCACTGAGCCTTCTGAGACCACTGACAAAAGCGGACACCAGGACAGCTATAAGGCGATGTGGTTCGATCGGTGTGTGGATCCGATGACCGGAGAGCCCACGCACATCTACAGAGGAGGATACTGGGAGACA

Function

symbol description
osbp Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP (oxysterol binding protein).

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090312-18 Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP (oxysterol binding protein).

Ensembl:

ensembl_id ENSDARG00000004634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001147 False 2488 mRNA 0.55 16 52662203 52699063
TCONS_00001148 True 150 mRNA 0.55 2 52690448 52699021

Neighbor

gene id symbol gene type direction distance location
XLOC_000676 slc44a1a coding upstream 10040 52632856 ~ 52652163 (+)
XLOC_000675 abca1a coding upstream 33796 52560549 ~ 52628407 (+)
XLOC_000674 tacr3l coding upstream 123686 52518176 ~ 52538517 (+)
XLOC_000673 BX323839.1 coding upstream 151447 52495043 ~ 52510756 (+)
XLOC_000672 cldnd1b coding upstream 175208 52481332 ~ 52486995 (+)
XLOC_000678 CABZ01021532.1 coding downstream 36421 52735484 ~ 52736125 (+)
XLOC_000679 wu:fc75a09 coding downstream 55022 52754085 ~ 52763447 (+)
XLOC_000680 smarca5 coding downstream 93376 52792439 ~ 52820954 (+)
XLOC_000681 NA coding downstream 108569 52807632 ~ 52807843 (+)
XLOC_000682 inpp4b coding downstream 230122 52929185 ~ 53225121 (+)
XLOC_000667 NA non-coding upstream 294005 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 294626 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 299096 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 315304 52345955 ~ 52346899 (+)
XLOC_000684 NA non-coding downstream 567337 53266400 ~ 53278288 (+)
XLOC_000686 NA non-coding downstream 621096 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 621868 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 665447 53364510 ~ 53368034 (+)

Expression


Co-expression Network