Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_000677 |
| gene name | osbp |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 52662203 ~ 52699063 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| osbp | Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP (oxysterol binding protein). |
| id | name | namespace |
|---|---|---|
| GO:0006869 | lipid transport | biological_process |
| GO:0097038 | perinuclear endoplasmic reticulum | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0015248 | sterol transporter activity | molecular_function |
| GO:0032934 | sterol binding | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-090312-18 | Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBP (oxysterol binding protein). |
| ensembl_id | ENSDARG00000004634 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00001147 | False | 2488 | mRNA | 0.55 | 16 | 52662203 | 52699063 |
| TCONS_00001148 | True | 150 | mRNA | 0.55 | 2 | 52690448 | 52699021 |
52,652,000
52,656,000
52,660,000
52,664,000
52,668,000
52,672,000
52,676,000
52,680,000
52,684,000
52,688,000
52,692,000
52,692,000
52,696,000
52,700,000
52,704,000
52,708,000
52,712,000
52,716,000
52,720,000
52,724,000
52,728,000
52,732,000
NC_007112.7
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_000676 | slc44a1a | coding | upstream | 10040 | 52632856 ~ 52652163 (+) |
| XLOC_000675 | abca1a | coding | upstream | 33796 | 52560549 ~ 52628407 (+) |
| XLOC_000674 | tacr3l | coding | upstream | 123686 | 52518176 ~ 52538517 (+) |
| XLOC_000673 | BX323839.1 | coding | upstream | 151447 | 52495043 ~ 52510756 (+) |
| XLOC_000672 | cldnd1b | coding | upstream | 175208 | 52481332 ~ 52486995 (+) |
| XLOC_000678 | CABZ01021532.1 | coding | downstream | 36421 | 52735484 ~ 52736125 (+) |
| XLOC_000679 | wu:fc75a09 | coding | downstream | 55022 | 52754085 ~ 52763447 (+) |
| XLOC_000680 | smarca5 | coding | downstream | 93376 | 52792439 ~ 52820954 (+) |
| XLOC_000681 | NA | coding | downstream | 108569 | 52807632 ~ 52807843 (+) |
| XLOC_000682 | inpp4b | coding | downstream | 230122 | 52929185 ~ 53225121 (+) |
| XLOC_000667 | NA | non-coding | upstream | 294005 | 52363402 ~ 52368198 (+) |
| XLOC_000668 | NA | non-coding | upstream | 294626 | 52365030 ~ 52367577 (+) |
| XLOC_000666 | LO017718.1 | non-coding | upstream | 299096 | 52353162 ~ 52363107 (+) |
| XLOC_000665 | NA | non-coding | upstream | 315304 | 52345955 ~ 52346899 (+) |
| XLOC_000684 | NA | non-coding | downstream | 567337 | 53266400 ~ 53278288 (+) |
| XLOC_000686 | NA | non-coding | downstream | 621096 | 53320159 ~ 53320674 (+) |
| XLOC_000687 | NA | non-coding | downstream | 621868 | 53320931 ~ 53321338 (+) |
| XLOC_000689 | AL935166.1 | non-coding | downstream | 665447 | 53364510 ~ 53368034 (+) |
