matn3a (matn3a)


Basic Information

Item Value
gene id matn3a
gene name matn3a
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22744412 ~ 22754161 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU208266
TTCATGACTGGCTCAAAGACAAGCCAACCACAAAGgtgcaaaatacaaataacaacCACTCTCCAAATGAGGCGCACATGCAGCTGAGAGGTGAATGGGCACCGATAGTTTGCAAAAAAGTGATAGATCCAGAACAAAAAGTTGTGTTTACAGGAGAATCAGGGAAGCATACAGGCGTGTCAAAAGTGGACTCAAATCCACCAATTGTTGTTCCACAACCGCAGTATATAGATCCAGAAAGATCTGTTGATCTTACAGAGCAATCAACAAATAACCAGCCAACTGTTCCAACAGTTGCTCCTGAGACAGGGTTTTATAAATCAAAGCCATCAATGACCTTGGCAACCTCACAATCTTTGAATATCTC
>XM_043219848.1
AGGATGCTGTAGGAATCATACCGGTGTCAGGTTAGACCAGAGGAACGCACACAAATTTGAAGCGGACTTGAGAAGAACGAAGAAACAATGAAGTCCTTCATTGGGAGTTTGGTATATTGCCTCTCTCTTCTGCTGGTTGATCTCTGTGAGTCCTATGACTTTAACAATCCACCCCACATTTTAGCACAAAGTTATGCACAAAGACGAAATCACGCTCTTCCACATCGGACGCTGAACCCAGCAGTATACAGGAGTAAATACTGGTTAGATGGACCTGATCAACCTAACAAACAGAGGAGGAAGATTTTGCCCCGTCTTATCCCAGTAGCTTATCCAGGACCCACAGCTCCTTCTCAACCCAAAGTTCATGACTGGCTCAAAGACAAGCCAACCACAAAGgtgcaaaatacaaataacaacCACTCTCCAAATGAGGCGCACATGCAGCTGAGAGGTGAATGGGCACCGATAGTTTGCAAAAAAGTGATAGATCCAGAACAAAAAGTTGTGTTTACAGGAGAATCAGGGAAGCATACAGGCGTGTCAAAAGTGGACTCAAATCCACCAATTGTTGTTCCACAACCGCAGTATATAGATCCAGAAAGATCTGTTGATCTTACAGAGCAATCAACAAATAACCAGCCAACTGTTCCAACAGTTGCTCCTGAGACAGGGTTTTATAAATCAAAGCCATCAATGACCTTGGCAACCTCACAATCTTTGAATATCTCCCTGCCTCAAAAACCTCTGCCACAATCCTTGTCAACATTGGCTCAAGGACCAAATTCACAAAATTCATTACCCCAATCTATTACCACCACTACCATGACACCTGAGGCATATCCTCAAAGTACCTTCCCCGAATCCTTGCCAACATCCACCCTTACACCGGAGGTGTACTCCCAGAGCACTTTATCCCCACTCTTACCAAAGCTCACCTATTCAAGAGGGCCATATCCTCAAAAAATCCCACCCCAATCACCATTAGAGCCGTATGACCAAAGTGCCTACCCAGAATCCCAGCCGGCATCCACACTGATACCACTGACAAATCCTCAAAGCACTTCGCCTCAACTTGTACCAGTGTCCACTCATAGATTAAAGCCTCTTTCCCAAAAGATCTCATCCCAGTCCTTGTCAACATTCAGTTTGACACACGAGTCATATCTTCAGACCGCCCCACCACAGTTTCTACTAATGTCTACCGTGCCAAAAGAATCTTTACCAGAGGCATCAAACAGGATTATTACCCACGACAGGATAGCCATCACAGGGAGAACAGCAACAGATTCACAATGTAGGAGCCGCCCACTGGACCTGGTCTTCATCATTGACAGCTCACGTAGCGTGCGTCCAGGTGAGTTTGAGAAGGTCAAGATCTTCCTGGCTGACATGGTGGACACTCTTGACGTTGGCCCCGATGCCACACGTGTTGCAGTCGTGAACTATGCCAGCACAGTCAAAATTGAGTTCTTCCTGAAGAGCCATCTTACAAAGGACTCTATAAAACCAGCCATCAACCGAATCGAACCCCTCGCCGCGGGAACCATGACTGGTATGGCCATCAAAAAAGCCATGGATGAAGCCTTCACTGAAAAGTCAGGAGCACGGCCCAAATCGAAGAACATCTCAAAGGTTGCCATCATTGTCACTGATGGACGTCCTCAAGACCAAGTTGAGGAGGTGTCAGCTGCAGCGCGAGCTTCGGGAATTGAGATTTACGCAGTCGGAGTGGATAGGGCTGACAAGCAGTCGTTGAAGCTCATGGCCAGCAATCCACTTGAGGACCATGTGTTCTACGTGGAGACCTACGGTGTCATTGAGAAGCTCACCTCAAAGTTCCGGGAGACATTGTGTGGTATGGACGCCTGTGCAATGGGACATGACTGTGAGCACATATGTGTCAGCAGTGGCTCCTCCTTTTACTGCAAGTGCCGGAAGGGCTATATTTTGAACGAGGACCAGAAAACATGTTCCCTAAAACATATGGATGCGTGTGAAATAGGACACAGCTGTCAACACACTTGTGTGAGCACTGGAAACTCGTATCGCTGCAAATGCCGCTCAGGCTTTGTCTTGAACGACGACATGCGAACATGCTCCATTAAAGGCGCTGGCGCTTACGGACATGGTGACAGTGTCCACAAGGGTGAccgaaacaaaaagaaagatggCAACCGAAATGGTGACGGTAGCGCTAGTGTGGATTCCTGTGCTTTGGGCCATGACTGCCAACACGCATGCATCTCCAGCGGTTCCTCCTATTATTGCTCGTGTCCTTCTGGCTTTGTCTTGATGCAGGACAAGAAATCATGTTTCAAAGCCAGTGACGCAGATGGAGATGGTAGTGCCAGTCTGGACTACTGTGCGCTGGGTCATGAATGCGAACACATTTGTGTCAACGATGATGCTTCCTATCACTGTGAGTGCCGCCGGGGTTTTGTGTTGCAAGAAGACAAGAAAGCATGTTCCAAAAAACAGGTGAAAGTGGAGATCGTTCAGGACCCGTGCATGTGTGAAGCCAGACTGGCTTTCCAGAGGCAGACACAAACCTCCCTACAGGACCTCAACTCCAAACTTGCTGCTGTCACAAGAAAGGTTGAGCAAATGGAAAACATGCTGGGACGCATGTAACGGAGCGGTTCTTGTGATTACTGGAGTGGATATGACAAGAAGGGCTCCTTTTTCATCAATAAAGCTTCATCACGGGCCACAATGATCACAAGAACGGCTTTGAAATTGTATCACAGCGGCTGATGTTCAGATGAAGTATAAAAGAATATTAACTATAGTCAAGtagtaattaatattaataagagaTTAAATTATGCATGAAATGCTGGAATGTACGtataatgatgtttttttgctCCCCAGAAATGgtcaaaaaaaatatcttaaatagactatattaaaacatgtattGTAACCAAAGACCGTtatcaaatgtgtattttaattgcttgtgttcaTGTCAAAGAAAGAATGttcttatttttactgtttaatctTATGTAGACTCTCATGTATACggttaaagttaaataaagacGATGTAGTCTACAGTATTTATAACCAAGCagtaatatttgctttattaaaacttGTAACACCTTTAA

Function

symbol description
matn3a Predicted to enable calcium ion binding activity. Predicted to be active in collagen-containing extracellular matrix. Is expressed in notochord; skeletal system; and vertebra. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 5; osteoarthritis; and osteochondrodysplasia. Orthologous to human MATN3 (matrilin 3).

NR:

description
uncharacterized protein LOC110529390 isoform X5

GO: NA

KEGG:

id description
K19467 MATN; matrilin

RNA

RNA id representative length rna type GC content exon number start site end site
TU208266 False 367 lncRNA 0.42 1 22745420 22745786
XM_043219848.1 True 3119 mRNA 0.45 10 22744412 22754161

Neighbor

gene id symbol gene type direction distance location
laptm4a laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288 coding upstream 135 22739633 ~ 22744277 (+)
mark3b mark3b,LOC107697167,LOC107743287,LOC107678848,LOC108412004,LOC107726756 coding upstream 6285 22686572 ~ 22738127 (+)
runx2b runx2b,runx2,LOC107678859,LOC107726745,LOC107697170,LOC107603075 coding upstream 82094 22622388 ~ 22662318 (+)
mmut mut,LOC107726757,LOC107697172,LOC107726528,LOC107667609 coding upstream 206551 22518165 ~ 22537861 (+)
mfsd2b si:dkeyp-115a10.3,mfsd2b,LOC107750078,LOC107697177,LOC107603080,LOC107667608 coding upstream 245804 22478061 ~ 22498608 (+)
ttc32 ttc32,LOC107678832,LOC107743292,LOC107697098 coding downstream 1831 22755992 ~ 22757979 (+)
zpax1 LOC107603073 coding downstream 4198 22758359 ~ 22763879 (+)
mixl1 LOC107743324,LOC107697096,LOC107726752,LOC107678837,LOC107603100,LOC107549665 coding downstream 13674 22767835 ~ 22769876 (+)
LOC122325427 NA coding downstream 33304 22787465 ~ 22789136 (+)
efr3bb efr3bb,ccl33.2,LOC107726755,LOC107678842,LOC107697142,LOC107549699 coding downstream 52998 22807159 ~ 22839446 (+)
G141091 NA non-coding upstream 186910 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 201880 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 203085 22541118 ~ 22541327 (+)
LOC122324401 NA non-coding upstream 629545 22098405 ~ 22114867 (+)
G140933 NA non-coding upstream 642951 22101238 ~ 22101461 (+)
G141121 NA non-coding downstream 166532 22920693 ~ 22923128 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 312426 23066587 ~ 23073665 (+)
LOC122324747 NA non-coding downstream 440460 23194621 ~ 23206082 (+)
G141207 NA non-coding downstream 576030 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 634331 23388492 ~ 23408824 (+)
fkbp1b fkbp1b other upstream 226729 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 267638 22471761 ~ 22476774 (+)
G140785 NA other upstream 899711 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 1542450 21168775 ~ 21201962 (+)
G140533 NA other upstream 1641902 21101768 ~ 21102510 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 88644 22842805 ~ 22860327 (+)
pln NA other downstream 589554 23343715 ~ 23351655 (+)
G141475 NA other downstream 1318710 24072871 ~ 24074423 (+)
G141524 NA other downstream 1686082 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1702829 24456990 ~ 24482661 (+)

Expression


Co-expression Network