LOC122324747


Basic Information

Item Value
gene id LOC122324747
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23194621 ~ 23206082 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU208384
CTAAcgctaatttatttaaaatatttcgcagtaaaacaaacataaattataCGTATCGCACATGATACAGCAGGCTTACGccgttttgtgtttgttgtcaaGCCGTACTGCCACCTAGTGTTTAATTGAGTCACTGCAACTATAATAAAGCCCTTTTATCAACACCACAACAAAACGCTAAGTCCTGGGCaaataaatttaagtttattGAAACATTTCATGTCATACAGTAACTACAGGTGGAACATTTATTCCCAAATCTCCCCCTGACAAATCCTATGACACTGGGAAAACAGAGCTGACAGAAGAATAAAGCACAAACCAGAAGGGAAAGGCGACTGAATCGgctataaaaaaggaaaaaagttcCTCCACGTTAAAGTTGCATCTGTGCGGTGCCATGCACTGGCAGTGTGGGAAGCATTTCGTCTCACAAAACGTCTCCTAGATGAACTATTcagtaaaaagtaaatgaaaagcCACCGAAGTAGCCCACATAATGATTAGAGGAGACCTTACGGCCAAAGGAGCTGATTGTCCCGACTTCCCTTCATACACCTGTGACAATTACAGCGGGGTGTTAAATAGCAGATTAAGTGTGATATAAATGACTTCACATGCCGAAAACCTGCTTAAACCGGTCTAATATCAGCTAAACACCAAGCTGTTTTTCTTCCAAGCAGGATAAAACAATTGTTTAGGGAATGTTTTATTGCTATGCAGcccaaatgtttcatttaatatagAGTAATCAATGCACAGACGTTCAGACCGGAGCAGTAACGTGAAAAGTGATATGTTAAATAACTCAACGGTAGTAAAGCAACACTGATGATTATAGGAACCTCTTCTAGAGATCTATACAGTAATGATCTTACAATTCACAGATTTTGAGGCACTACAGCCGACTCTACGGAGACTGAATAGGGTAAGAAAGTTGTTGAGAATCTTCCTCCTCAATTTCTGCACACCTTTATGTTACTTTTCTCAGAGTATAAAGAGTAAATTGGCTGGGATTAAATACGCTACGCTACATCGCTGTGTAAAAATGCAAGTTCACTTCCCTAGCAAGTTAATATCAGCATCTTTTACAAAGACGCCGTTAATACAGTAGGCTCAATGGCACTCGAAGGACGTCATTCAGTAAAGATGTTTGAAAATACCTCGACCGATATGTAAGGGTGGATATCATGAAAGATGTCAA
>TU208391
TTAActataagaaaaaacaaaaaaacaaatgtcacagaaaattatattttaagaatttttgctttaaaatatataaatcgtTTTCTTGGTGGCAAAACATGACCTGGATATCTCTTCAACAAAACTGGCCCCAAAATTAATTCTAGATGTACTACATGGCACCTCTCCACTTCTGTTCTTGGCCTGTTAGTGAAGCAAGCAAAGAAAACGAAAGCTCATGGATGTGCCCTGTTGTGTCATTTCTGTCCCGGTCACCTACTGACCACCCTGTGTGCGAAACAGGAAGTAGCATCATCCCGTTTGCCTTCGCTTTGGAGCAGGGCGGGATCGCTCTAAGCTAAAACAGAGAAGTTAAAAACAATGTGCATACATCTCGAGCAAATGGTAACTCGTTGCTATATCCATCTACTTCAGTACAAGAGAAGAAGTGTGATTGATTAAAGTAGAAGCCCTACGTTTGAGCTCATTTGCAGCTCACCTACAGAGGGTTACACGAAAGAGCAAGTCAAGAATCGAAACTCTTATACCATATCACTCCATCCGATCACTTTACTCgctatgtaaatatttgttttgtccAGTCAAGTGTTTCTTTACAAGAATAAACCAAGATGGTGACGTACATATGCAAACAATCCTTTGCGGCCACTGAGTAACAGTATGTCATCTTCCCTCAGTGTTTCTCAGTGGTTCATCCATCTCCAGTGAACGTCGAAGCAGTCTGTTCTCCAAACGGCATAGAACAAGAAGAATCTGGTATGATACATATAATACATGTGCAGTCTTAATCTCTTTCTGGtgtctcctctttctctctctctcgtctccaGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTGTGGGTGTATGAGTAAATGTCAGagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTGTAAGCATCAGATCACGACTTTGATCTCGGAACATAAAACGGTTCATCAATTGAAACCAGATGAATTAGCCTGCGTATGAAAATCAAAGGATGTACTCACGGTAATAGAGATGCCAAGTCCTTCGTGATCTTCTTTGGTCAAAACCACTTTGCGTATAGGGCCTACTCCCTGAGTCTTTTTCAGAGAATCTGTGTCCTGCCGAGGAAAACGTAGAGAGGAATTAAATCAGGTTTACCACAAAATCAGAcaaat
>XR_006247218.1
CACCACAACAAAACGCTAAGTCCTGGGCaaataaatttaagtttattGAAACATTTCATGTCATACAGTAACTACAGGTGGAACATTTATTCCCAAATCTCCCCCTGACAAATCCTATGACACTGGGAAAACAGAGCTGACAGAAGAATAAAGCACAAACCAGAAGGGAAAGGCGACTGAATCGgctataaaaaaggaaaaaagttcCTCCACGTTAAAGTTGCATCTGTGCGGTGCCATGCACTGGCAGTGTGGGAAGCATTTCGTCTCACAAAACGTCTCCTAGATGAACTATTcagtaaaaagtaaatgaaaagcCACCGAAGTAGCCCACATAATGATTAGAGGAGACCTTACGGCCAAAGGAGCTGATTGTCCCGACTTCCCTTCATACACCTGTGACAATTACAGCGGGGTGTTAAATAGCAGATTAAGTGTGATATAAATGACTTCACATGCCGAAAACCTGCTTAAACCGGTCTAATATCAGCTAAACACCAAGCTGTTTTTCTTCCAAGCAGGATAAAACAATTGTTTAGGGAATGTTTTATTGCTATGCAGcccaaatgtttcatttaatatagAGTAATCAATGCACAGACGTTCAGACCGGAGCAGTAACGTGAAAAGTGATATGTTAAATAACTCAACGGTAGTAAAGCAACACTGATGATTATAGGAACCTCTTCTAGAGATCTATACAGTAATGATCTTACAATTCACAGATTTTGAGGCACTACAGCCGACTCTACGGAGACTGAATAGGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTGTGGGTGTATGAGTAAATGTCAGagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTCTCCTTGTCCAGATACTTGGCTGCCAGTCTGGCGCCGTACACCTCGGCCTGTAGTACCGCAATGTGCCTGCGGAGGGCCTCGTTCTCTTTCTTCAACATCTTCACCTCTGCCTCCAACTTGGCCTCcttcactttttctttcttgctgGCCTCCAGCTCCTTCTCCTGAGACACGCGGTCAAACAAAGTCAAGAGGACAAGAAACAGAAGACCTACGTCACCACAAAAACTACAAACTCACAACAGTGCATATGACAAGCGAGGAAGCTGTTGCTGTGCTCACCATCCTGTCCTTGATAGAGTCAGAGTCGACCGCCTGTCCACCTTTGGCTTGGAGTTTGAGCTGCATGGCGTGAAGTTGAAGAAGTTGTTCGTGGACCTCCTTCTCCACCACAACC
>XR_006247219.1
CACCACAACAAAACGCTAAGTCCTGGGCaaataaatttaagtttattGAAACATTTCATGTCATACAGTAACTACAGGTGGAACATTTATTCCCAAATCTCCCCCTGACAAATCCTATGACACTGGGAAAACAGAGCTGACAGAAGAATAAAGCACAAACCAGAAGGGAAAGGCGACTGAATCGgctataaaaaaggaaaaaagttcCTCCACGTTAAAGTTGCATCTGTGCGGTGCCATGCACTGGCAGTGTGGGAAGCATTTCGTCTCACAAAACGTCTCCTAGATGAACTATTcagtaaaaagtaaatgaaaagcCACCGAAGTAGCCCACATAATGATTAGAGGAGACCTTACGGCCAAAGGAGCTGATTGTCCCGACTTCCCTTCATACACCTGTGACAATTACAGCGGGGTGTTAAATAGCAGATTAAGTGTGATATAAATGACTTCACATGCCGAAAACCTGCTTAAACCGGTCTAATATCAGCTAAACACCAAGCTGTTTTTCTTCCAAGCAGGATAAAACAATTGTTTAGGGAATGTTTTATTGCTATGCAGcccaaatgtttcatttaatatagAGTAATCAATGCACAGACGTTCAGACCGGAGCAGTAACGTGAAAAGTGATATGTTAAATAACTCAACGGTAGTAAAGCAACACTGATGATTATAGGAACCTCTTCTAGAGATCTATACAGTAATGATCTTACAATTCACAGATTTTGAGGCACTACAGCCGACTCTACGGAGACTGAATAGGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTCTCCTTGTCCAGATACTTGGCTGCCAGTCTGGCGCCGTACACCTCGGCCTGTAGTACCGCAATGTGCCTGCGGAGGGCCTCGTTCTCTTTCTTCAACATCTTCACCTCTGCCTCCAACTTGGCCTCcttcactttttctttcttgctgGCCTCCAGCTCCTTCTCCTGAGACACGCGGTCAAACAAAGTCAAGAGGACAAGAAACAGAAGACCTACGTCACCACAAAAACTACAAACTCACAACAGTGCATATGACAAGCGAGGAAGCTGTTGCTGTGCTCACCATCCTGTCCTTGATAGAGTCAGAGTCGACCGCCTGTCCACCTTTGGCTTGGAGTTTGAGCTGCATGGCGTGAAGTTGAAGAAGTTGTTCGTGGACCTCCTTCTCCACCACAACC
>XR_006247220.1
GCTTCTGCCGCGCGCGTTgctttttggtatttttaaaggtttatattCTCAATTTAGCGTGTAAGTAACTGagttttaaactacattttttgtaGTATCACCATCCAGACCTTCACTGAAGCCAACGAAGAACTGCAGCGTTAACGATTTTGAGGCACTACAGCCGACTCTACGGAGACTGAATAGGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTGTGGGTGTATGAGTAAATGTCAGagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTCTCCTTGTCCAGATACTTGGCTGCCAGTCTGGCGCCGTACACCTCGGCCTGTAGTACCGCAATGTGCCTGCGGAGGGCCTCGTTCTCTTTCTTCAACATCTTCACCTCTGCCTCCAACTTGGCCTCcttcactttttctttcttgctgGCCTCCAGCTCCTTCTCCTGAGACACGCGGTCAAACAAAGTCAAGAGGACAAGAAACAGAAGACCTACGTCACCACAAAAACTACAAACTCACAACAGTGCATATGACAAGCGAGGAAGCTGTTGCTGTGCTCACCATCCTGTCCTTGATAGAGTCAGAGTCGACCGCCTGTCCACCTTTGGCTTGGAGTTTGAGCTGCATGGCGTGAAGTTGAAGAAGTTGTTCGTGGACCTCCTTCTCCACCACAACC
>XR_006247221.1
GCTTCTGCCGCGCGCGTTgctttttggtatttttaaaggtttatattCTCAATTTAGCGTGTAAGTAACTGagttttaaactacattttttgtaGTATCACCATCCAGACCTTCACTGAAGCCAACGAAGAACTGCAGCGTTAACGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTGTGGGTGTATGAGTAAATGTCAGagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTCTCCTTGTCCAGATACTTGGCTGCCAGTCTGGCGCCGTACACCTCGGCCTGTAGTACCGCAATGTGCCTGCGGAGGGCCTCGTTCTCTTTCTTCAACATCTTCACCTCTGCCTCCAACTTGGCCTCcttcactttttctttcttgctgGCCTCCAGCTCCTTCTCCTGAGACACGCGGTCAAACAAAGTCAAGAGGACAAGAAACAGAAGACCTACGTCACCACAAAAACTACAAACTCACAACAGTGCATATGACAAGCGAGGAAGCTGTTGCTGTGCTCACCATCCTGTCCTTGATAGAGTCAGAGTCGACCGCCTGTCCACCTTTGGCTTGGAGTTTGAGCTGCATGGCGTGAAGTTGAAGAAGTTGTTCGTGGACCTCCTTCTCCACCACAACC

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
TU208384 False 1204 lncRNA 0.39 1 23194991 23196194
TU208391 False 1698 lncRNA 0.45 4 23196691 23201711
XR_006247218.1 True 1779 lncRNA 0.47 8 23195153 23206082
XR_006247219.1 False 1756 lncRNA 0.47 8 23195153 23206082
XR_006247220.1 False 1200 lncRNA 0.51 9 23194621 23206082
XR_006247221.1 False 1159 lncRNA 0.51 8 23194621 23206082

Neighbor

gene id symbol gene type direction distance location
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding upstream 2236 23164445 ~ 23192385 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding upstream 47645 23142907 ~ 23146976 (+)
rfx6 rfx6,LOC107678847,LOC107697139,LOC107743320 coding upstream 75485 23109345 ~ 23119136 (+)
trnal-cag_35 NA coding upstream 94333 23100206 ~ 23100288 (+)
plg plg,LOC107678850,LOC107727632,LOC107697138,LOC107743301 coding upstream 132345 23055116 ~ 23062276 (+)
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding downstream 4708 23210790 ~ 23214047 (+)
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding downstream 8994 23215076 ~ 23222915 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding downstream 26302 23232384 ~ 23311466 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding downstream 106117 23312199 ~ 23320816 (+)
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding downstream 617018 23823100 ~ 23824879 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding upstream 120956 23066587 ~ 23073665 (+)
G141121 NA non-coding upstream 271493 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 637119 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 652089 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 653294 22541118 ~ 22541327 (+)
G141207 NA non-coding downstream 124109 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 182410 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 365013 23571095 ~ 23571454 (+)
G141436 NA non-coding downstream 565013 23771095 ~ 23771426 (+)
G141439 NA non-coding downstream 576426 23782508 ~ 23782720 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 334294 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 440460 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 676938 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 717847 22471761 ~ 22476774 (+)
G140785 NA other upstream 1349920 21844146 ~ 21844701 (+)
pln NA other downstream 137633 23343715 ~ 23351655 (+)
G141475 NA other downstream 866789 24072871 ~ 24074423 (+)
G141524 NA other downstream 1234161 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1250908 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1762798 24968880 ~ 24994837 (+)

Expression


Co-expression Network