G141465 (serinc1,LOC104938560,LOC102778905)


Basic Information

Item Value
gene id G141465
gene name serinc1,LOC104938560,LOC102778905
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23949261 ~ 24007460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU208798
atgcttttgaacagtagtatacatttatatttcttcTCGTGCTGCTACGTTTTCTGATCCTAATGTGGGACTGGACAAGTCACGCTTTCTCAATGCATACCTGCATACCAGCAGCGAGAGTTTCCCTCCTCCATTTTCTCCACCCAGGACTCGTTCCAAGAATGAGCAAAGTCGATCAAGAGCACCAGCTGGATGAGGATGAAACAAAACGCTCCAGACATGCCTATGTAAAACCAGACTGGAAGAGACCCGGCAGAAGATCACCATTACATTctcacaaataaatacaaagatcAACAAGTCTCACCACTTAAGCTAGCTAAACACTgtgccatttattattattaatttattatttttttacatataaattccACTGCATAACATACAATGGGCGCAAAGCTATGtaaggtaataaaataaaactttaccCGTAGTAAAAGGGCCTTCGGGAATGAAGAAAGCCCCGACTGTAATAGCAGTGGCAGCCGCGAACTTGAAAAACCAAAACCTGTGGaagatattaatacatttagaaatgacTTTCATTTGCTAAAGCGGCGTCTTGCTCATCAGGTCAGAGCAACGCCTGCGTACCCGTTATGCACAGCGGCTCTCGGATCCTGGCTGCTCTTGACCTTTACCATGATGAGAGAGAAAAGCAGGAAAAACATGGCCATCCCGAAGCACACGCGATACACGGCCTTATAGCCCACCAGCACGTCGCAGTTCACGTGACCCTCCACTCCCGGGATGGACGAGCCCATCCCTCCTTCACAAAAGCCCGGAATCTCTTCAGGTGCCCCTCCATGCCCGGCATGAGCATGATGCAGGCGATGCCCACCCCCAGCAGCATGAAGAAGGCGTAGATCAGCCGAGTGACCGTGGAGTTGTTTCCGCTCGGGCAGCATCTGCACAGCAGGCAGGGAGCGCTGCCGCAAAGGCAAGGGATCTGCAGACGGAAAAATTATACGAGACGTTTCAgagggtttgtttttttgagacCCTAGGGCTATCACGGTCGTTTTATTTCGGCATGACTTGAACATTTTCAggtagtacacacacatatgcgtagatagatagatatagatatgaCTTTTAATTAggcaggggaaaaaaatctatttttttttcagtactttTTGCAGATTAGTTGATAAATTACACAGTTTTAACAAAGGAATAAGATGaatattatctatctatctctctctctctctgtctcacacacacacacactctctctctctgtctctgtctgtctctgtctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctcacataTGTGTTTATGaagtcacttttttaaaattcagatgGCATAATTGTTGTACCTCTACATGTTGTGGATTGTATGGGAACTTataagcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacattcaatacGTGTATGAACTGCGACCCCATGCACTGTGACCTCAACGTGATGTGGGATTCATGtcaataattctaataataaatgtatgatgatcaaaatataaatatatctatatttcatGTAAAGTTAGTTACCATGAACCATAACTGAAGACATCTGTAACACGTATATGAATGTATTGTCATGCTTTAATGGACATATCCAACcaatgcattttactgtaaagcaataacacgagaaaaaaaaaaaagatatataaatatatatatgtgaaaagAATGATTCCTGTACATTTGTCATATGAAACTTTGAGAAAggaatgtttaaaatatgtcaCAAATTAAACAATGCCATTTATACCCGTTTCATAGTTTTTGTGGCCTGCGCCgtgttttaaatgatatgtgtgtgtgtgtgtgtgtg

Function

symbol description
serinc1 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

NR:

description
PREDICTED: serine incorporator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208798 True 2147 lncRNA 0.43 3 23949261 24007460

Neighbor

gene id symbol gene type direction distance location
hsf2 LOC107727660,LOC107602187,LOC107675230,LOC107716856,LOC107598084,LOC107675083 coding upstream 3307 23940664 ~ 23945954 (+)
gja1b LOC107675226,LOC107602186,LOC107716890,LOC107598086,LOC107697125 coding upstream 101758 23844087 ~ 23847503 (+)
gja13.1 cx32.2,LOC107727577,LOC107675217,LOC107602176,LOC107697126,LOC107717163,LOC107598087 coding upstream 105771 23840772 ~ 23843490 (+)
gja12.1 cx28.9,LOC107717177,LOC107717184,LOC107598108,LOC107697093,LOC107602175,LOC107727580,LOC107675219 coding upstream 113408 23832318 ~ 23835853 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding upstream 117878 23829232 ~ 23831383 (+)
fut8b fut8b,fut8a,fut8,LOC107730784,LOC107726710,LOC107559123,LOC107669464 coding downstream 114397 24121857 ~ 24348875 (+)
LOC122324313 hsp90ab1,LOC107704054,LOC107669433,LOC107559118,LOC107568216 coding downstream 255029 24262489 ~ 24268335 (+)
gphnb gphnb,gphn,LOC107669455,LOC106571666,LOC107730782 coding downstream 372551 24380011 ~ 24453951 (+)
LOC122324917 LOC107732493,LOC107704058 coding downstream 462218 24469678 ~ 24477818 (+)
eif2s1b eif2s1b,eif2s1,LOC107704056,LOC107732494,LOC107559120 coding downstream 478283 24485743 ~ 24491374 (+)
G141464 NA non-coding upstream 434 23947616 ~ 23948827 (+)
G141439 NA non-coding upstream 166541 23782508 ~ 23782720 (+)
G141436 NA non-coding upstream 177835 23771095 ~ 23771426 (+)
G141403 NA non-coding upstream 377807 23571095 ~ 23571454 (+)
G141216 NA non-coding upstream 540437 23388492 ~ 23408824 (+)
LOC122324430 NA non-coding downstream 14674 24022134 ~ 24032657 (+)
G141523 NA non-coding downstream 416580 24424040 ~ 24424479 (+)
G141534 NA non-coding downstream 492631 24500091 ~ 24504465 (+)
G141535 NA non-coding downstream 510626 24518086 ~ 24518367 (+)
G141536 NA non-coding downstream 511713 24519173 ~ 24519491 (+)
pln NA other upstream 597606 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 1088934 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 1195100 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 1431578 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 1472487 22471761 ~ 22476774 (+)
G141475 NA other downstream 65411 24072871 ~ 24074423 (+)
G141524 NA other downstream 432783 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 449530 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 961420 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 1156521 25163981 ~ 25168421 (+)

Expression


Co-expression Network