fig4a (fig4,fig4b,LOC107667833)



Basic Information


Item Value
gene id fig4a
gene name fig4,fig4b,LOC107667833
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25250898 ~ 25311427 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU209342
CAGACACACGCGCCCCGCAGCAGGCAGGAGCCGCTTCCGTCCGCTGACGCTGTTTCTGCTCGTGCAGGTTATTCGAGGAGCTGTACGAGGATCACGGCGACACGCTGTCGTTACAGTACGGAGGATCTCAGCTGGTCCATCGAGTGAAGACGTACCGAAAGATCGCGCCCTGGACGCAGCACTCCAAAGACATCATGCAGACGCTCTCCCGTTACTATAGCAACGCCTTCTCAGATGCAGACAGACAGGACTCAATAAACCTGTTCCTGCAGGTCTACCAGCCGTCGGAGTCCAAGCCTCACCTCTGGGAGCTTCCTACAGACTTCTACCTCCACCACAGTGATACCATGATCCTCCCACAGCAGCGGCACAGtTACACACACTGGTGGACTGACGAGTCCTGACGTTCCTGCCGTTGCCGTGTGATGAagctcgGTGTGAGGAGAACAGGAGGAAGGTGGCGGTGAAGCGTGTGAACCGGTTCGACGAGAGCATCGACATCTACACAGAGTTCTTCAAACCGTACGAACTCACCTCGTTCGACGACACCTTCAGCATCGCCATGACCAACTCGGCCCGGGAGTTCATGCCGAAGACGGTCGGCCTCGACCCGAGTCCCTTCACTGTCCGCATAAACCAGACGAGAGCGCCAAGTCAGTGCTGGGCAATAAGTCCAGCAAGGAGGAGACGGTGCTGCAGAGGAAGACGGCGGCCAGTGCTCCACCTCCTCCCAGCGAGGAGCAGATCTCCAGCAGCTCCGAGGATGACTCGAGGAAGAGCGTGAGGAAGATGGGCCGCGTCTCAGCGCTCCACGCCCATCAAACTGTCCGAGCGAGCGACGGCGTCCGCACGAGTGAGGATCAGCCCCAGCCGCGTCTGCCGCCCGTGAGAGAGACGTATGGCCTGAACCTATTGGCCAACCCCCCGGATGAAGACATCCTCATATACCACAGatttgCTCATCTGGGCCAGAACCAGCACAAGGTGGAGAGGAACAATGATACCAAGAAATTAGACGCGTCATTCATCAGcctgtgagtatatatatatatatatata
>TU209343
CAGACACACGCGCCCCGCAGCAGGCAGGAGCCGCTTCCGTCCGCTGACGCTGTTTCTGCTCGTGCAGGTTATTCGAGGAGCTGTACGAGGATCACGGCGACACGCTGTCGTTACAGTACGGAGGATCTCAGCTGGTCCATCGAGTGAAGACGTACCGAAAGATCGCGCCCTGGACGCAGCACTCCAAAGACATCATGCAGACGCTCTCCCGTTACTATAGCAACGCCTTCTCAGATGCAGACAGACAGGACTCAATAAACCTGTTCCTGCAGGTCTACCAGCCGTCGGAGTCCAAGCCTCACCTCTGGGAGCTTCCTACAGACTTCTACCTCCACCACAGTGATACCATGATCCTCCCACAGCAGCGGCACAGtTACACACACTGGTGGACTGACGAGTCCTGACGTTCCTGCCGTTGCCGTGTGATGAagctcgGTGTGAGGAGAACAGGAGGAAGGTGGCGGTGAAGCGTGTGAACCGGTTCGACGAGAGCATCGACATCTACACAGAGTTCTTCAAACCGTACGAACTCACCTCGTTCGACGACACCTTCAGCATCGCCATGACCAACTCGGCCCGGGAGTTCATGCCGAAGACGGTCGGCCTCGACCCGAGTCCCTTCACTGTCCGCATAAACCAGACGAGAGCGCCAAGTCAGTGCTGGGCAATAAGTCCAGCAAGGAGGAGACGGTGCTGCAGAGGAAGACGGCGGCCAGTGCTCCACCTCCTCCCAGCGAGGAGCAGATCTCCAGCAGCTCCGAGGATGACTCGAGGAAGAGCGTGAGGAAGATGGGCCGCGTCTCAGCGCTCCACGCCCATCAAACTGTCCGAGCGAGCGACGGCGTCCGCACGAGTGAGGATCAGCCCCAGCCGCGTCTGCCGCCCGTGAGAGAGACGTATGGCCTGAACCTATTGGCCAACCCCCCGGATGAAGACATCCTCATATACCACAGAAAGCTGTGTTCAGTCGCCTCACGCTGTTGTCTCCACACGCCGTCTCTTTCTCCAGAGAATCCCTCAATCCGTCTGAATCAAATGACTGCCATCAGCGGCTcgtcatgcacacacacacacacacacacacagacacaggcacacagacagacacacacacacacacacac
>XM_043220553.1
TCTCAGCTGAGCGGTGACGGTCACATGACGCAGCCTAGCGTTCCGTTTATACACGATATTTCTCGACATATCGAGCCTCACGACGGCGTTCGCTGCTTactcaGACTCAAACTCAAACTCTGGTCTGTGTTTACAGCCGATGGACTGATCATGCCTGTGAACGCTGCTGTGATCCGAGGGGTTCAGAAGCTGGTGCTTTACGAGACCAGAGCCAGGTATTTTCTGGTCGGAAGCAACAATGCTCAAACGAAACACCGCGTGCTGAAGATCGACCGCACCGAGCCGCGGGATCTGGTCGTCATCGACGACAAGcaTGTGTACAGTCAGCAGGAAGTGCGGGAGCTTCTGGGTCGTCTGGATCTTGGTAATCGCACTAAGATCGGACAGAAGGGATCCTCCGGTCTCTCCAGAGCCGTTTCTGCCTACGGCATTGTGGGGTTCGTGCGGTTTCTGGAGGGTTACTATATCGTGTTGATCACGAAGCGTCGTAAAATGGCGGACATCGGCGGCCACTCGATTTATAAGATCGAAGACACGAATATGATCTACATCCCCAACGACTCGGTGAGAGTCACACACCCAGCGAGATATGTGAGAGTCTTCCAGAACGTGGATCTGTCCAGTAACTTCTACTTCAGTTACAGCTACGACCTGAGCCACTCGCTGCAGTATAACCTGACTCTGCAGCAGATGCCGTGTGACGCCGGGGAGAGCGAGGAGCTGAACCCCGGCGGCAGACAGGACAGCTTCGACATCTTCGAGGAGGAGGGACTCCCCACTCAGGttgtCCACAGTTTAATTAACGAGCCCTACGCTAAGTATGTGTGGAATGTTCGTCTGCTGGAGAAGGTCAAAGACATCGTTCATCCTGATTGGCTGCTCTACATCATTCACGGATTCTGTGGCCAATCCAGTATCCTCTTATACGGCCGGCGGTGAAACGTGGCGCTCATCGCCCGTCGCTCCAGCCGCTGCGGGACACGCTTCCTCAAACGAGGAGCCAACTGTGAGGGCGACGTAGCGAACGAGGTGGAGACGGAGCAGATCATCCACGACGCCTCGGTCATGTCGTTGACGGCGGGCAGCTTCTCCTCCTGCGTTCAGGTCCGGGGCTCGGTTCCTCTTCACTGGTCTCAAGACATCTCCACCATGATGCCCAAACCCCCCATACGCCTGGACCAGGCCGATCCGTACGCTCACATCGCTGCTCTTCACTTCGATCAGATGCTGCAGAGGTTCGGGTCGCCCATCATCATCCTCAACCTCGTCAAGAAACGAGAGAAGCGTAAGCACGAGAAGATCCTGAGCGAGGAGTTTTACCCCGCCATCATCAACCTGAACCAGTTCCTGCCGCCGGAGCACGCCATCGAGTACATCGCCTGGGACATGGCTCGCTACACCAAGAGCAAGCTGTGTAACGTGTTGGATCGCCTCAGTATGATCGCCGAGAGCGTGGTGAAGAGAACCGGCTTCTTTGTTAACAGACCCGACTTTTATTGCCACGCCTTACGTCCCGACGAAAGGTGGGGAGATCTCGGAGGGAAGGTCACACCGAATGGCAGGTTACAGACGGGTGTTTTGAGGACGAACTGCGTGGACTGTCTGGACCGGACGAACACCGCTCAGTTCATGGTGGGGAAGTGTGCTCTGGCCTATCAGCTGCGCCTCGGGATGATCGACAAACCCAAGCTTCAGTTCGACACGGACTCGTTATTCGAGGAGCTGTACGAGGATCACGGCGACACGCTGTCGTTACAGTACGGAGGATCTCAGCTGGTCCATCGAGTGAAGACGTACCGAAAGATCGCGCCCTGGACGCAGCACTCCAAAGACATCATGCAGACGCTCTCCCGTTACTATAGCAACGCCTTCTCAGATGCAGACAGACAGGACTCAATAAACCTGTTCCTGCAGGTCTACCAGCCGTCGGAGTCCAAGCCTCACCTCTGGGAGCTTCCTACAGACTTCTACCTCCACCACAGTGATACCATGATCCTCCCACAGCAGCGGCACAGtTACACACACTGGTGGACTGGAGTCCTGACGTTCCTGCCGTTGCCGTGTGATGATGAAGctcgGTGTGAGGAGAACAGGAGGAAGGTGGCGGTGAAGCGTGTGAACCGGTTCGACGAGAGCATCGACATCTACACAGAGTTCTTCAAACCGTACGAACTCACCTCGTTCGACGACACCTTCAGCATCGCCATGACCAACTCGGCCCGGGAGTTCATGCCGAAGACGGTCGGCCTCGACCCGAGTCCCTTCACTGTCCGCAAACCAGACGAGAGCGCCAAGTCAGTGCTGGGCAATAAGTCCAGCAAGGAGGAGACGGTGCTGCAGAGGAAGACGGCGGCCAGTGCTCCACCTCCTCCCAGCGAGGAGCAGATCTCCAGCAGCTCCGAGGATGTCGAGGAAGAGCGTGAGGAAGGGGCCGCGTCTCAGCGCTCCACGCCCATCAAACTGTCCGCGAGCGACGGCGTCCGCACGAGTGAGGATCAGCCCCAGCCGCGTCTGCCGCCCGTGAGAGAGACGTATGGCCTGAACCTATTGGCCAACCCCCCGGATGAAGACATCCTCATATACCACAGatttgCTCATCTGGGCCAGAACCAGCACAAGGTGGAGAGGAACAATGATACCAAGAAATTAGACGCGTCATTCATCAGcctGCGCTCGGTGTCTCTGTTCCCGTCGGACAGCATCTCACGAGGTTTCGGCTCGGTGGACAGCCAGAGCGGGGAGGTGTTCCAGTGTCCGCGTCCAGGCTTGCGGGTGAGGGTTGAGTCAGGACTCTGTGTCAGGAGGGCGTGCTCATGTACGCGGTACATCAAAAACAGATACTGTGACCAGCTGACAGATTGGACATAG

Function


symbol description
fig4b Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria. Orthologous to human FIG4 (FIG4 phosphoinositide 5-phosphatase).
fig4 Predicted to enable phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity. Predicted to be involved in phosphatidylinositol biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of myelination; nervous system development; and phosphatidylinositol metabolic process. Located in endosome membrane and lipid droplet. Implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria.

NR:

description
polyphosphoinositide phosphatase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG:

id description
K22913 FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase

RNA


RNA id representative length rna type GC content exon number start site end site
TU209342 False 1059 lncRNA 0.57 8 25283268 25305742
TU209343 False 1124 TUCP 0.58 8 25283268 25304671
XM_043220553.1 True 2868 mRNA 0.56 34 25250898 25311427

Neighbor


gene id symbol gene type direction distance location
LOC122324912 slc22a23,LOC107739176,LOC100334012,LOC107671089,LOC107661357,LOC107557020 coding upstream 105192 25130040 ~ 25145706 (+)
phactr1 phactr1,LOC107557022,LOC107739173 coding upstream 175421 25059241 ~ 25075477 (+)
LOC122324830 LOC107672943,LOC107739185,LOC107567017 coding upstream 199750 25043034 ~ 25051148 (+)
si:ch211-221n20.8 LOC107557001 coding upstream 207936 25029948 ~ 25042962 (+)
eef1db eef1d,LOC107557023,LOC107728121,LOC107655838 coding upstream 221926 25018698 ~ 25028972 (+)
LOC122324406 LOC107564602,LOC107739193,LOC107667838,LOC107557003,LOC107661365,LOC107728124 coding downstream 1993 25313420 ~ 25319835 (+)
cdc40 cdc40 coding downstream 67280 25378707 ~ 25393625 (+)
apobb.2 LOC107678311,LOC107564590,LOC107738890 coding downstream 97577 25409004 ~ 25421734 (+)
bub1ba NA coding downstream 111089 25422516 ~ 25435076 (+)
pak6b pak6,LOC102789564 coding downstream 128403 25439830 ~ 25462725 (+)
G141765 NA non-coding upstream 38382 25212298 ~ 25212516 (+)
G141742 NA non-coding upstream 47962 25202266 ~ 25202936 (+)
G141757 NA non-coding upstream 59997 25189787 ~ 25190901 (+)
G141753 NA non-coding upstream 69874 25180342 ~ 25181024 (+)
G141719 NA non-coding upstream 80600 25169118 ~ 25170298 (+)
G141819 NA non-coding downstream 176207 25487634 ~ 25488167 (+)
G141838 NA non-coding downstream 211477 25522904 ~ 25524164 (+)
G141830 NA non-coding downstream 225004 25536431 ~ 25548168 (+)
G141840 NA non-coding downstream 264601 25576028 ~ 25578465 (+)
G141854 NA non-coding downstream 279982 25591409 ~ 25592461 (+)
G141775 NA other upstream 27789 25221967 ~ 25223109 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other upstream 82477 25163981 ~ 25168421 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other upstream 256061 24968880 ~ 24994837 (+)
G141524 NA other upstream 757517 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other upstream 768237 24456990 ~ 24482661 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other downstream 465048 25776475 ~ 25828915 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other downstream 604607 25916034 ~ 26039208 (+)
LOC122325160 LOC107564323,LOC107659819 other downstream 684987 25996414 ~ 26002923 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other downstream 692336 26003763 ~ 26024232 (+)
G142173 NA other downstream 923994 26235421 ~ 26257234 (+)

Expression



Co-expression Network