wasf1 (wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835)


Basic Information

Item Value
gene id wasf1
gene name wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25326508 ~ 25377416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU209665
GTTTAGGCTTCATTACATTGTGTTTAAGAGGCAGGGTCGCTCGTTTCCAGAAGAACTTCAGTCGGATACGTGTCTCACTTTTCAATTTGATGATTAAGGAGAGGTCCTCGTGGGTTTGATGACCGATGGGAATATTTTGAGCCGTATCCTAGCCGGGGTTTATAGTTTTCTGTGTCTCGGTCTCTGCAGGCAGATGTACATCGATCACCTGGACGGGCCTTTCTCTCTCGCCGCGCTGCCGTACTCCCAGATGAACGAACTCCTGAGCCGCTCGGGAGAGAGAAACTACGGCCGGCCGCATGagcctcctccacctccaccaaCATACCCCCCAGACACCAAACCAGCCTCCGTCATCAGCTCCAGCTCAGGTTTCTCGGACAGCGTCACACAGTCTCCGGCTCGCACGCCTGTCTTCCTCAACTCCAATGCCCCGCCCCCGGCCCCTCCCCCTTTACCCCCCCCTCCTCCCCTCCCAGCCAGCCTATCAGGTTCAAGAATGCGCGGTTCGGCCCCGCCTCCGATCCCCCTTACCTTCCC
>TU209666
CTCCCGTGGCCCCGCCCCTTCACTCCTCCCCTGCCCGCGGACAGTTGGACAAGACTCCACCCACAGCCGGAGACGGAACGGTTTGCCGCCGCCTCCCCTCCTCCCCTCTGCCCCTCCCAGGAAACAGAAGCTCCTCCCCTGCTCATCCTCAGGCCCGCCCAACATGCCTTCCTTCCCATCAGGAGCGGTTTGTCGCCGCCCACTCACTCGGGTCACGAGGTCAAGAGGTATCCATCCAACCTGCCGCCAATCAGCGACGCCCGCAGCGTTCTATTGGAGGCCATCCGTAAAGGGATCCAGCTGAGGAaggtggaggagcagcgggagCAAGAGGCCAAGCACGAGCGCGTGGGGAACGACGTGGCCACCATCCTGTCGCGCCGGATCGCCGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTCGACGAGGTCGACTGGATGGAGTGAAGGCCGCTTCCCGACGAAGAGTTTTCCCACAAACACTCTCCGATCCGTCGCAGTCGAGTTCAGGAAACGGCCGACGGCTGCATTCCACGTTCCCAGAATGCTtcgctttaatgttttttaaccaCTCGTCGTGCAAttgatgaatgaaaataaccacgttggggtttttttttttatctgtcatATTTCTTTCGTCCGCCTTTTATTCTCTGTAGGAGCAGCGAAAGCCGTCGTGGGGTTACAGCGGCCTCTTCTGGCCACGACGGGAACGTCTCGATTCGGCCGATGGAAAGCGTCCTATCAGAATGTGACGGATGATTCTCATGCTTTCTATATCATCTAAACCGTTCTTCCATTTCAGAGATGTGATGTTTGGTGTCATTTTGTGCTTGTGATGGACAAagtcaaaggaaaaaaaaaaataaaggagcGCTTTTATTAACTTCGAGACGACTCAAAATACATGAATCTCCTGTCCAGGTTATATTTCACCTCACGACCAACAATCAAACAAACTAGCTAgctaaaaattgtattaattaaaaaaaaaaaaaaaaaaaaaaaagcatttcccatgaagaatttttgtaaaaacaaatttcatttaattacattttgtaaaattcatttaattaaaatctggCATTTTGTTgggcaaaaacattaaa
>TU209701
TCCCGTCTCTTTAACGGGATTCAAGCTATCTGTATATCAGTAGTGTATTTCTGCAATGAACGGAACCGACAGGAATATTTTAAGGAATAACCCGGGGGAAATCATGGAATAATACGAATACATACCATTTGTTCAGgTGTGGTGAGCGAGCGAGAGCATCAGGATGCCGCTGGTCAAGCGCAGTATCGACCTCGTCACCTGTGCCACACAGCTCTGCCGCACAGCATCAAGAACGAGCTGGAGTGTGTGACCAACATCTCTCTGGCCAACGTCATCCGTCAGCTGAGCAGCCTGAGTAAATATGCGGAGGATTTGTTCGGCGAGCTCTTTAATGAAGCTCATTCCTTCTCATTTCGAGTGAATTCACTTCAGGAAAGAGTCGACCGCCTGTCAATCAGCGTCACTCAACTCGACCCCAAAGAGGAGGAgttGTCTCTTCAGGACATCACCATGAGGAAGGCCTTCCGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGAGCGTCAGTCTCTGCCCGTGCCCATGCAGGAGACGTACGAGCTGTGCGAACAACCTCCGCCGCTCAACATCCTCACGCCCTACAGGGATGATGGGAAGGAAGGGCTGAAGTTCTACACCAACCCGTCATACTTCTTCGATCTGTGGAGAGAGAAGATGCTGCAGGACACAGAAGACAAGAGGAAAGAGAGGCGGAAACAGAAGTTGCAGGATCCCCACATGTATGATCAGGTCTATAAATATCTAGACCTCCCCGTGCAGaagaacaTCGACCGACCTCACGATCCCGAGAAGATCCCGCGAGCGCCTCACGACCGCAGGAAGGAGTGGCAGAAGATGGCTCTGGGGGCGGAGCTGGCCGAAGACGAGGACAAACACAGAGAAGCCAACGGATCGGCGGCgtac
>XM_043218756.1
GTGGTGAGCGAGCGAGAGCATCAGGATGCCGCTGGTCAAGCGCAGTAGACCTCGTCACCTGTGCCACACAGCTCTGCCGCACAGCATCAAGAACGAGCTGGAGTGTGTGACCAACATCTCTCTGGCCAACGTCATCCGTCAGCTGAGCAGCCTGAGTAAATATGCGGAGGATTTGTTCGGCGAGCTCTTTAATGAAGCTCATTCCTTCTCATTTCGAGTGAATTCACTTCAGGAAAGAGTCGACCGCCTGTCAATCAGCGTCACTCAACTCGACCCCAAAGAGGAGGAgttGTCTCTTCAGGACATCACCATGAGGAAGGCCTTCCGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGAGCGTCAGTCTCTGCCCGTGCCCATGCAGGAGACGTACGAGCTGTGCGAACAACCTCCGCCGCTCAACATCCTCACGCCCTACAGGGATGATGGGAAGGAAGGGCTGAAGTTCTACACCAACCCGTCATACTTCTTCGATCTGTGGAGAGAGAAGATGCTGCAGGACACAGAAGACAAGAGGAAAGAGAGGCGGAAACAGAAGTTGCAGGATCCCCACATGTATGATCAGGTCTATAAATATCTAGACCTCCCCGTGCAGcagaagaacaTCGACCGACCTCACGATCCCGAGAAGATCCCGCGAGCGCCTCACGACCGCAGGAAGGAGTGGCAGAAGATGGCTCTGGGGGCGGAGCTGGCCGAAGACGAGGACAAACACAGAGAAGCCAACGGATCGGCGGCgtacacgacacGCAGGCAGATGTACATCGATCACCTGGACGGGCCTTTCTCTCTCGCCGCGCTGCCGTACTCCCAGATGAACGAACTCCTGAGCCGCTCGGGAGAGAGAAACTACGGCCGGCCGCATGagcctcctccacctccaccaaCATACCCCCCAGACACCAAACCAGCCTCCGTCATCAGCTCCAGCTCAGGTTTCTCGGACAGCGTCACACAGTCTCCGGCTCGCACGCCTGTCTTCCTCAACTCCAATGCCCCGCCCCCGGCCCCTCCCCCTTTACCCCCCCCTCCTCCCCTCCCAGCCAGCCTATCAGGTTCAAGAATGCGCGGTTCGGCCCCGCCTCCGATCCCCCTTACCTTCCCAGCAGCCCCGGCCATCCCTCCTCCCCGCCCCTCCCAGATCGCCCGGGCGTTCTCCACCCCGCCCCCTCCCGTGGCCCCGCCCCTTCACTCCTCCCCTGCCCGCGGACAGTTGGACAAGACTCCACCCACAGCCGGAGACGGAACGGTTTGCCGCCGCCTCCCCTCCTCCCCTCTGCCCCTCCCAGGAAACAGAAGCTTCCCCTGCTCATCCTCAGGCCCGCCCAACATGCCTTCCTTCCCATCAGGAGCGGTTTCGCCGCCCACTCACTCGGGTCACGAGGTCAAGAGGTATCCATCCAACCTGCCGCCAATCAGCGACGCCCGCAGCGTTCTATTGGAGGCCATCCGTAAAGGGATCCAGCTGAGGAaggtggaggagcagcgggagCAAGAGGCCAAGCACGAGCGCGTGGGGAACGACGTGGCCACCATCCTGTCGCGCCGGATCGCCGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTCGACGAGGTCGACTGGATGGAGTGAAGGCCGCTTCCCGACGAAGAGTTTTCCCACAAACACTCTCCGATCCGTCGCAGTCGAGTTCAGGAAACGGCCGACGGCTGCATTCCACGTTCCCAGAATGCTtcgctttaatgttttttaaccaCTCGTCGTGCAAttgatgaatgaaaataaccacgttggggtttttttttttatctgtcatATTTCTTTCGTCCGCCTTTTATTCTCTGTAGGAGCAGCGAAAGCCGTCGTGGGGTTACAGCGGCCTCTTCTGGCCACGACGGGAACGTCTCGATTCGGCCGATGGAAAGCGTCCTATCAGAATGTGACGGATGATTCTCATGCTTTCTATATCATCTAAACCGTTCTTCCATTTCAGAGATGTGATGTTTGGTGTCATTTTGTGCTTGTGATGGACAAagtcaaaggaaaaaaaaaaataaaggagcGCTTTTATTAACTTCGAGACGACTCAAAATACATGAATCTCCTGTCCAGGTTATATTTCACCTCACGACCAACAATCAAACAAACTAGCTAgctaaaaattgtattaattaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
wasf1 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF1 (WASP family member 1).

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 1 isoform X4

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05753 WASF1; WAS protein family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU209665 False 540 TUCP 0.58 2 25328580 25329605
TU209666 False 1118 lncRNA 0.49 2 25326508 25328514
TU209701 False 903 TUCP 0.53 7 25330926 25377416
XM_043218756.1 True 2204 mRNA 0.56 12 25326611 25357995

Neighbor

gene id symbol gene type direction distance location
gata4 gata4,LOC107671084,LOC107739180,LOC107557004,LOC107661355,LOC107728131,LOC107564601 coding downstream 103428 25212806 ~ 25223080 (-)
fdft1 fdft1,LOC107661354,LOC107671088 coding downstream 114912 25202241 ~ 25211596 (-)
ctsbb ctsbb,LOC107557005,LOC107661356 coding downstream 127577 25190559 ~ 25198931 (-)
LOC122325043 LOC107671087,LOC107728123,LOC107661362,LOC107556999 coding downstream 136988 25169118 ~ 25189520 (-)
bphl bphl coding downstream 173388 25151212 ~ 25153120 (-)
LOC122325309 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 coding upstream 93366 25470782 ~ 25561241 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding upstream 198613 25576029 ~ 25596184 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding upstream 219697 25597113 ~ 25609145 (-)
hsp90aa1.1 hsp90aa1.1,LOC107704377,LOC107557012,LOC107564585,LOC103024454,LOC106533044 coding upstream 231900 25609316 ~ 25615276 (-)
LOC122325306 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding upstream 249236 25626652 ~ 25630935 (-)
G141972 NA non-coding downstream 699 25277144 ~ 25325809 (-)
G141966 NA non-coding downstream 20805 25218529 ~ 25305703 (-)
G141979 NA non-coding downstream 32060 25293302 ~ 25294448 (-)
G141951 NA non-coding downstream 157909 25165238 ~ 25168599 (-)
G141941 slc22a23,LOC107739176,LOC107572580,LOC107578994 non-coding downstream 195316 25066735 ~ 25131192 (-)
G141998 NA non-coding upstream 22135 25399551 ~ 25400241 (-)
G142006 NA non-coding upstream 48202 25425618 ~ 25426323 (-)
G142009 NA non-coding upstream 53383 25430799 ~ 25431686 (-)
G142026 NA non-coding upstream 79993 25457409 ~ 25459232 (-)
G142015 NA non-coding upstream 96790 25474206 ~ 25596812 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 474729 24838652 ~ 24851779 (-)
G141651 NA other downstream 679087 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 794145 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 808765 24254393 ~ 24517743 (-)
G141502 NA other downstream 1319843 24004687 ~ 24006665 (-)
G142058 NA other upstream 271076 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 370251 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 673413 26050829 ~ 26054469 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 710999 26088415 ~ 26096971 (-)
G142281 NA other upstream 808244 26185660 ~ 26187919 (-)

Expression


Co-expression Network