LOC122324601 (slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124)


Basic Information

Item Value
gene id LOC122324601
gene name slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25747667 ~ 25754008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU209814
ACTAAAGCTAACGTGAAACATGTTTGTCTGTTACTGTATTCATGGTTTATTTACAATCTATTAGATTGTATAACAGATTAATATCTATTAAATCTATAAATGGCTCTGTTTTGGTTTGAGGGTTGTGTATGCCAGTtaactttggataaaagcatccatTAACGCCGTTCAGGACTCTTTAGATGATGCACCCGTCACTAGCTGCACGTGTTTCTGTGAGCCACTGCCGTAAAACTAACAGTGTGTTGCACTTCAAGGCAAAGGGCGAGACCCAGACAGACGTGGTTCTGAAGGCCTCCTCCCGTGAGGTTGTATGTTAATCAGCTGTATTTTCTGAGTCTTGTCTTGGTGCCTTTGTTCTGATCACGAGGGTTTTTCACAGCAGAAGTGTCACTTTGTTGTAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTAAGTAAAGACCGGGTCCGTTCCTCTTTCCATTGGACTGGAATCTTACTGAATATGATCAAACATCAGCAGCTCTAGATTGATCATCTGAACCGTCGGCCGTGGCCTGATCCCAGCAGGTTTAATGGGAAAAACTCTGTTTTCTAGGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTGTCTGGTCTCTATAAAGGCCTCGGCTCGCCCATGATGGGCCTGACCTTCATC
>XM_043219136.1
ATGACGAGGTTAAAACGTCTCTCACTCTCGGTCGCTCCTGTTTCAGGTGCAGCAGGTGTTCTGGTCGGACATCCCTTTGATACGGTCAAGGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTATGTTTGGCCTTTATAAAGGTATTGGGTCACCCATGATGGGCCTGACGTTCATCAACGCCATCGTCTTTGGTGTTCAGGGCAACGCAATGCGCAAGTTGGGCGAGGACACGCCCATAAACCAGTTCCTAGCCGGAGCGGCGGCCGGCGCCATCCAGTGCGTGATCTGCTGCCCGATGGAACTGGCCAAGACCCGGATGCAGATGCAAGGAACGGGCGAGAAGAAGTCGTCCTCTCGGAAGGTCTACAAAAACTCGCTGGACTGCCTGGCTCGCATTTACCAGCGCGAGGGTTTGCGCGGGGTTAACCGAGGGATGTTGACGACTCTCATCCGAGAGACGCCGGGATTTGGCGTTTATTTCCTGGCGTACGACCTCCTGACGCGATCGCTGGGGTGCGAGCCGGAGGACCCGTACTTGATCCCCAAGCTGCTGTTCGCTGGAGGCATGTCGGGAATCGCGTCTTGGCTTTCGACGTATCCGGTGGACGTGATAAAATCCCGCCTCCAAGCCGACGGCGTCGGAGGAAAGTACCAGTACAGCAGCATCATGGACTGCACGAGAAAGAGCATCCAGCGTGAAGGTTGGCGGGTTTTCACACGCGGACTTACTTCCACTCTTCTACGCGCTTTTCCGGTCAACGCAGCCACTTTCGCAACGGTAACGCTCTTCCTTTTGTACATACGCCCGGACGAGGGATCGAAGGATTGCGAAGCGGCTCCAGCTTCGCATCAAGCGGCGTTGCAGCAGCAAGCGCAACCGTCCAGTCTGTGAGTAACCCCGAAATACTGGGATAGCGACTAGCGTAGCACTTCCCGAAATAATGGCTGACCTGTTACTAAACGAACAGTTGCTGCGCATCGAGCACATCTGTCCACTGTAAACAGAATTGCACAACCTTTCTATCCATACAATGACTTGAGCTCCgcatctgtaaatatatataatatatatattttttatatttaatgatatttaacgAAGACGTTCCCTGTGTCTGCCTTACGAGAGCTGAGCGAATCCGACCTCTGGTAAAACTTGATTTGACCTTGCAAATTATTGCTACACTGAAAAGATTCCAGTGTCTAAACAAATGCTCAAGTTTAGTTAGGGTGGACACCAGTTGATGCAAATGAAAAGAAGGTTTCAGGTCATTTGTGTTTTTCGCTGGAAAGTTTTGGGAAAATAGTTACCAAGGACTTTCCCAGcctcatttttgtttgcatcaAACTTAGCATGGCCTCTAGCCTGACTAAGTTAATATCCCAGACACAAGATTAAATTTGTACTCTCAACCCCACCCAGTCATAAACAAATACGGTTTTGGCAATGGGGAATTTAGTCTTtgttactgtgatgtttttaatctgaGGAGTGAGAACCTTTTAATGGAAGCTGCTGGTGACATTGTGTACAAGGTCGCAATATCTTGGCCAACTGTAAAAGTTGTGCAATCAATATGGTAGACGCCAAATTACGTTTGCTGAAATTTCTAAATCACTGAGGAGCTATTGATGTTGTCTTTCATTTGGTTCCTGGTGTACTGAAAAGAGAATAAACCAAAGGTTTTTGCCAGATAAATCAAATTCTGTCCCCCTTGTTTTATGGTGTATTATCtccaaaatgaatgcaatatttGCATGTTCTCTGTAACTTATTAAAGTGTTTGGATACAGATTGTATCTGGTCCACTGTAATAATATCTAAACTGCTGTTAAATGACCTGCTGTGTTTAAGTAACGTGTTTTGATTTACAGAAGCATGCGGGTTGTCTTCAAgatcaatatattttatgcgtgtatatatatcaaGGCTTGAATTTTAGATGGATGTGTAAATAGAGTTCCATGTGGTTGATTTCCGAGTGCTGAATGTAGGAGACTAAAACATGCACTTGGGAAAGCAGTAGACAGAAGAGGTTTGCAAGGCTTTTAAAGAATGTGCTGCTCATTTTGTAACGGTTATGGATTGTACGTTGAATTGAATGTAAATATGTAGTATTCCATTAAAAAGGGAAGTTTAGACATAtgcattgaaaacaaaaatgttttgtgtgataTCTGTGAGAAATGTAAATAGTGTATGTTACAGAGTTAGATCGGTTTCAAAAGTACTAAAttggttttaatttgaatagttttagttttctttctttttcagatttgtTGTTACTGCCGTTGCCGAACGGATGGATCAGTATTGAATCTGATTAAATGTCTGTCctatttttgtatgaaaaagaTTAGTTCTGCTCTGCTCCCATTTGAAAAGTGATTGGCCTCAACCAATTCATAAATTGCTTTTGGTCGGCTAAagtatgtgaaaataaatgggaTAAATTATA
>XR_006247204.1
AAAGCTAACGTGAAACATGTTTGTCTGTTACTGTATTCATGGTTTATTTACAATCTATTAGATTGTATAACAGATTAATATCTATTAAATCTATAAATGGCTCTGTTTTGGTTTGAGGGTTGTGTATGCCAGTtaactttggataaaagcatccatTAACGCCGTTCAGGACTCTTTAGATGATGCACCCGTCACTAGCTGCACGTGTTTCTGTGAGCCACTGCCGTAAAACTAACAGTGTGTTGCACTTCAAGGCAAAGGGCGAGACCCAGACAGACGTGGTTCTGAAGGCCTCCTCCCGTGAGGTTGTATGTTAATCAGCTGTATTTTCTGAGTCTTGTCTTGGTGCCTTTGTTCTGATCACGAGGGTTTTTCACAGCAGAAGTGTCACTTTGTTGTAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTCCATCGCTGTCGGGGTCCCCCAGGGCTCTGTACGTCCAccgctcttcttcttcttcacgcGTCCAGGAGTCACCATCCTGGGAATGCTGTAAAATTTCCCAAAAACACTGCTTTGCTTGGTCTCTGATATAAGGACAAGGATATTCAACATTATATCACAGAGATTGCTAACTTTGTTACATGGAGTAAAGAAATCAATGTTAGAAGTTGATGGGCAACAACTTACCTCTCGTGACTGAAAATGAGCCTATtaggttattattaataattaggtCTGTTTATTGATTACAAGCTTTCATGGAAA
>XR_006247205.1
AAAGCTAACGTGAAACATGTTTGTCTGTTACTGTATTCATGGTTTATTTACAATCTATTAGATTGTATAACAGATTAATATCTATTAAATCTATAAATGGCTCTGTTTTGGTTTGAGGGTTGTGTATGCCAGTtaactttggataaaagcatccatTAACGCCGTTCAGGACTCTTTAGATGATGCACCCGTCACTAGCTGCACGTGTTTCTGTGAGCCACTGCCGTAAAACTAACAGTGTGTTGCACTTCAAGGCAAAGGGCGAGACCCAGACAGACGTGGTTCTGAAGGCCTCCTCCCGTGAGGTTGTATGTTAATCAGCTGTATTTTCTGAGTCTTGTCTTGGTGCCTTTGTTCTGATCACGAGGGTTTTTCACAGCAGAAGTGTCACTTTGTTGTAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTGTCTGGTCTCTATAAAGGCCTCGGCTCGCCCATGATGGGCCTGACCT
>XR_006247206.1
CCTGTTTCAGGTGCAGCAGGTGTTCTGGTCGGACATCCCTTTGATACGGTCAAGGCAAAGGGCGAGACCCAGACAGACGTGGTTCTGAAGGCCTCCTCCCGTGAGGTTGTATGTTAATCAGCTGTATTTTCTGAGTCTTGTCTTGGTGCCTTTGTTCTGATCACGAGGGTTTTTCACAGCAGAAGTGTCACTTTGTTGTAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTAAGTAAAGACCGGGTCCGTTCCTCTTTCCATTGGACTGGAATCTTACTGAATATGATCAAACATCAGCAGCTCTAGATTGATCATCTGAACCGTCGGCCGTGGCCTGATCCCAGCAGGTTTAATGGGAAAAACTCTGTTTTCTAGGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTCCATCGCTGTCGGGGTCCCCCAGGGCTCTGTACGTCCAccgctcttcttcttcttcacgcGTCCAGGAGTCACCATCCTGGGAATGCTGTAAAATTTCCCAAAAACACTGCTTTGCTTGGTCTCTGATATAAGGACAAGGATATTCAACATTATATCACAGAGATTGCTAACTTTGTTACATGGAGTAAAGAAATCAATGTTAGAAGTTGATGGGCAACAACTTACCTCTCGTGACTGAAAATGAGCCTATtaggttattattaataattaggtCTGTTTATTGATTACAAGCTTTCATGGAAA
>XR_006247207.1
CGATGACGAGGTTAAAACGTCTCTCACTCTCGGTCGCTCCTGTTTCAGGTGCAGCAGGTGTTCTGGTCGGACATCCCTTTGATACGGTCAAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTCCATCGCTGTCGGGGTCCCCCAGGGCTCTGTACGTCCAccgctcttcttcttcttcacgcGTCCAGGAGTCACCATCCTGGGAATGCTGTAAAATTTCCCAAAAACACTGCTTTGCTTGGTCTCTGATATAAGGACAAGGATATTCAACATTATATCACAGAGATTGCTAACTTTGTTACATGGAGTAAAGAAATCAATGTTAGAAGTTGATGGGCAACAACTTACCTCTCGTGACTGAAAATGAGCCTATtaggttattattaataattaggtCTGTTTATTGATTACAAGCTTTCATGGAAA
>XR_006247208.1
ATCACGATGACGAGGTTAAAACGTCTCTCACTCTCGGTCGCTCCTGTTTCAGGTGCAGCAGGTGTTCTGGTCGGACATCCCTTTGATACGGTCAAGGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTGTCTGGTCTCTATAAAGGCCTCGGCTCGCCCATGATGGGCCTGACCTTCATCA

Function

symbol description
slc25a29 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A29 (solute carrier family 25 member 29).

NR:

description
PREDICTED: mitochondrial basic amino acids transporter-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
TU209814 False 732 lncRNA 0.47 2 25750918 25753680
XM_043219136.1 True 2515 mRNA 0.44 3 25747667 25754002
XR_006247204.1 False 834 transcript 0.44 3 25752541 25753677
XR_006247205.1 False 577 transcript 0.47 3 25750923 25753677
XR_006247206.1 False 781 transcript 0.47 3 25752541 25753966
XR_006247207.1 False 525 transcript 0.48 4 25752541 25754004
XR_006247208.1 False 235 transcript 0.55 3 25750917 25754008

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_30 NA coding downstream 113724 25633860 ~ 25633943 (-)
LOC122325306 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 116732 25626652 ~ 25630935 (-)
hsp90aa1.1 hsp90aa1.1,LOC107704377,LOC107557012,LOC107564585,LOC103024454,LOC106533044 coding downstream 132391 25609316 ~ 25615276 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding downstream 138522 25597113 ~ 25609145 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding downstream 151483 25576029 ~ 25596184 (-)
LOC122325519 plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323 coding upstream 492 25754500 ~ 25776163 (-)
pak5 pak5,LOC107659820,LOC107731598 coding upstream 134161 25888169 ~ 25935072 (-)
LOC122324391 LOC107712205,LOC107564326,LOC107659794 coding upstream 190126 25944134 ~ 25959702 (-)
magl NA coding upstream 209975 25963983 ~ 25976828 (-)
lrfn5b lrfn5b,LOC107659815,LOC107564320,LOC107712211,LOC108411613,LOC108257655 coding upstream 282386 26036394 ~ 26049767 (-)
G142015 NA non-coding downstream 150855 25474206 ~ 25596812 (-)
G142042 NA non-coding downstream 168406 25514247 ~ 25579261 (-)
G142016 NA non-coding downstream 219706 25523201 ~ 25527961 (-)
G142026 NA non-coding downstream 288435 25457409 ~ 25459232 (-)
G142009 NA non-coding downstream 315981 25430799 ~ 25431686 (-)
G142201 plcb4,LOC107557901,LOC106608066,LOC107659823,LOC107564330 non-coding upstream 84364 25838372 ~ 25865079 (-)
G142260 NA non-coding upstream 252261 26006269 ~ 26010388 (-)
G142261 NA non-coding upstream 256642 26010650 ~ 26012248 (-)
G142245 NA non-coding upstream 263363 26017371 ~ 26033198 (-)
G142242 NA non-coding upstream 264711 26018719 ~ 26055565 (-)
G142058 NA other downstream 97574 25648492 ~ 25650093 (-)
mettl24 LOC107738893 other downstream 338892 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other downstream 370251 25326508 ~ 25377416 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 895888 24838652 ~ 24851779 (-)
G141651 NA other downstream 1100246 24571413 ~ 24647421 (-)
LOC122324466 samd15 other upstream 296821 26050829 ~ 26054469 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 334407 26088415 ~ 26096971 (-)
G142281 NA other upstream 431652 26185660 ~ 26187919 (-)
G142278 NA other upstream 478016 26232024 ~ 26234245 (-)
rps29 NA other upstream 729313 26483321 ~ 26560387 (-)

Expression


Co-expression Network