G142085 (arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149)


Basic Information

Item Value
gene id G142085
gene name arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26208165 ~ 26216147 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU209843
atcatGATGTCATGCTTGTGGTTTTTATTCGTGTAAGCTATATCTTCTGACTTCGCttactgctttattttattctctaccttaattttgtgtattttactttcattttattacaagtAGTTGAGCAGATAATAATTGTTCAATCCCGGGCATATGCCGgtgtaaacattttaagacattaTCGGCCGATTATGAAATTGCTCCGATAATATCTCGCATCTCTAAATACAGAATTAAACCGGATATTTCCGGTATCCCACatcaaacacataaaaacacctAAAACAAAGCATTCAATGAGTCTGAAAGAATTAATAGCTACTTCCTGTGAAACCGGCGGCAAATTTCAGAGAGAAAAGAACaggcttGGTGTGACTTGTGCGGGGGTCGGTACCGGGACCGCGATAGAAACGGGTTAAGAGGGGGCTGGATTAGATCAGAAACACTGGTTTTCTTCGCTCAAGTCACACTCGTTCCCGGCTTCTCCTCCAGGAACGGCCAGGAACGACTCGAGCGCTCCTTCGAGGACAGTTTCTTCACGGAACGCGACCGGATCGTTCTCGTTCTCCCGATACATTCGTTAAACGCGATGGCACGGAGGTAAACAAACaagctgccattttttttttttgactgacgAACCGGGTCttcggacacacacacacacacacacacacacacacacacacaaacaaaaaaaaccctttatcTTTTTCTGCGAAAACGCTTCTGAAAGCAATACTTGACGGGCTTAACAGGAGGACTACAGAAAGAAAAGTCGGGTTACACGTCGACGGAATCAAAGACAGAGAATCAAACCGAACTTTACAGACAGAAGCCAGAGTTACTGGTTAATTGCTTCTAGTTTCGGCGCGTCTTGGCCGCCTCGCGTTAGGACTTGTAATTAGACGTGAGCCAGGTGAGCCCTTCGTAGAGTCCGTCGCCCGTCGTCGCGCAGGACGGCTGCACGTACCAGTTCCGGTCTCTGATCCGGGTCAGACCCAGCTTCTCCTGGATCTCGTGCGGCTTCATGGCGTCCGGCAGGTCCTGCTTGTTGGCGAAGATCAAGATGATCGCGTCGCGCATCTCGCGGTCGTTGATGATGCGGTGCAGCTCCTGTCGCGCCTCGTCGATCCGGTCGCGGTCCGCGCAGTCCACCACGAAGATCAAGCCCTGGGTTCCGGTGTAGTAGTGCCGCCAGAGAGGACGGATCTTATCCTGGCCGCCGACGTCCCACACGTTGAACTTGACGTTCTTGTACGTCACGGTCTCCACGTTGAACCCCACCGTCGGGATGGTGGTGACCGACTGTCCCAGTTTGAGTTTGTAAAGGATCGTCGTCTTCCCCGCCGCGTCAAGCCCGAGCATCAATATCCTCATCTCCTTGTTGCCGAAGATCTTCGAAAGCATCTTCCCCATCTTGTTGGCCGGGCATATATTATCGCGTTTGTTTCGCGGGAAGAGGAGAGCGCGCGGTTTGGGGGGCTTTCTCGGCTATGCctcagaaaaaaaccccaaaacaaaacaaaaaaaaaaacacttcaactTTTTAGCCTTTAGCACCACCCTCCAAATCTGGAAAAAGGGGTCCTAGTGTAGTACGCGTTGAGATCCGTGACAGGCCTTTCTGGTTTCCTCAGACTTCCTTCTCGTGTACCGGCTGTCGGGTCGCCTTTTTTTCGCGCTCATTCCCTTCAGATCGTTCGTTCGGTCAAACGTCAGTCATTCATCCTTCGCTTCCCCTCTTCCGTCC

Function

symbol description
arf6a Predicted to enable GTP binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be active in endocytic vesicle; recycling endosome membrane; and ruffle. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).
arf6 Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane.

NR:

description
PREDICTED: ADP-ribosylation factor 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209843 True 1753 lncRNA 0.50 2 26208165 26216147

Neighbor

gene id symbol gene type direction distance location
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding upstream 13203 26185676 ~ 26194962 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding upstream 139120 26055121 ~ 26069045 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding upstream 177179 26024861 ~ 26030986 (+)
LOC122324854 LOC107575530 coding upstream 214071 25982812 ~ 25994094 (+)
LOC122325520 LOC107712196,LOC107659793,LOC107564338 coding upstream 227787 25979467 ~ 25980378 (+)
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding downstream 2432 26218579 ~ 26229745 (+)
faua fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549 coding downstream 14639 26230786 ~ 26234218 (+)
trnas-gcu_31 NA coding downstream 341536 26557683 ~ 26557764 (+)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 347509 26563656 ~ 26565704 (+)
LOC122324339 LOC107548517,LOC107662059 coding downstream 504351 26720498 ~ 26725162 (+)
G142106 NA non-coding upstream 46193 26141928 ~ 26161972 (+)
G142101 NA non-coding upstream 64848 26134018 ~ 26143317 (+)
G142095 NA non-coding upstream 73390 26102811 ~ 26134775 (+)
G142163 LOC107567392,LOC107567390,LOC107659807 non-coding upstream 83855 26123892 ~ 26124310 (+)
G142087 NA non-coding upstream 124227 26080181 ~ 26083938 (+)
G142300 NA non-coding downstream 75102 26291249 ~ 26301914 (+)
G142304 NA non-coding downstream 95403 26311550 ~ 26311958 (+)
G142305 NA non-coding downstream 106788 26322935 ~ 26328268 (+)
G142306 NA non-coding downstream 113578 26329725 ~ 26365642 (+)
G142331 NA non-coding downstream 251325 26467472 ~ 26467852 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other upstream 168957 25916034 ~ 26039208 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other upstream 183933 26003763 ~ 26024232 (+)
LOC122325160 LOC107564323,LOC107659819 other upstream 205242 25996414 ~ 26002923 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 379250 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 896738 25250898 ~ 25311427 (+)
G142173 NA other downstream 19274 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 262404 26478551 ~ 26479201 (+)
G142416 NA other downstream 687100 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 756098 26972245 ~ 27093757 (+)

Expression


Co-expression Network