LOC122325160 (LOC107564323,LOC107659819)



Basic Information


Item Value
gene id LOC122325160
gene name LOC107564323,LOC107659819
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25996414 ~ 26002923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU209893
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcttatTGTCTTTCCTTCAGAGTAAAATGATGTGTccttgattttctgttattgtttttttcctatttGTCAGATGTCAGAGTCCAAGGCTAAGAATGAATGTGTGGTTTTGTAGATTTCTGCTGTTTGAGAGTCAGCTTTCAGAAACTGTGTGACATGagaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagcagatgaaaaagttttgttttcagtCTGAATTACAGGAAAACATGAAGATCTGCTGAAGACGCCTCCAAAGCTTCGGTCAGATCCTCAGACACAATCTGACGTGACatcatgagtgtgtgtgtggattagGAGCTCAactgaggagtgtgtgtgtgtgtgtgtgtgtggatcagaAGCTGAtttgaagagtgtgtgtgtgtgtgtgtggatcagaAGCTGATCTGAGGgaggagcgtgtgtgtgtgtgtgtgtgtggatcaggCGCTGATCtgcgcagtgtgtgtgtgtgtgtgtgtgtgtgtggatcagaCACCGATGGAGGAGCTGATGGAGCGATCGGATGGAGCAGCACAGAGAGACATGTTCAGTGACACAGACTTCATGATCGatgaGCAGAGCTCTCACGTCAGTGGGATGGAGGTGATGGATCGCCTCATGTTTCTGGAGCAGCGTGTCCAGATGCAGGACGACGAGATCCAGCTGCTGAAGATCAACATGACTGATGTTCTGAAGAGACTCGACATCTCAGAGGAGCAGAGGAGGACATCTGCTAAAGGTACACACTCACTATACTCtctcacatgtacacacacacacacacacacacactatga
>XM_043220076.1
TGCAGCATTGACAGAATGAGAGATTATGATTGTTAATTAAACTCTGAGATAATGAACATACGGTGCTCTGATGAATATTACTGATACTTCAGCAGCTCTTCAACTAATtaactgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcttatTGTCTTTCCTTCAGAGTAAAATGATGTGTccttgattttctgttattgtttttttcctatttGTCAGATGTCAGAGTCCAAGGCTAAGAATGAATGTGTGGTTTTGTAGATTTCTGCTGTTTGAGAGTCAGCTTTCAGAAACTGTGTGACATGagaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagcagatgaaaaagttttgttttcagtCTGAATTACAGGAAAACATGAAGATCTGCTGAAGACGCCTCCAAAGCTTCGGTCAGATCCTCAGACACAATCTGACGTGACatcatgagtgtgtgtgtggattagGAGCTCAactgaggagtgtgtgtgtgtgtgtgtgtgtggatcagaAGCTGAtttgaagagtgtgtgtgtgtgtgtgtggatcagaAGCTGATCTGAGGgaggagcgtgtgtgtgtgtgtgtgtgtggatcaggCGCTGATCtgcgcagtgtgtgtgtgtgtgtgtgtgtgtgtggatcagaCACCGATGGAGGAGCTGATGGAGCGATCGGATGGAGCAGCACAGAGAGACATGTTCAGTGACACAGACTTCATGATCGatgaGCAGAGCTCTCACGTCAGTGGGATGGAGGTGATGGATCGCCTCATGTTTCTGGAGCAGCGTGTCCAGATGCAGGACGACGAGATCCAGCTGCTGAAGATCAACATGACTGATGTTCTGAAGAGACTCGACATCTCAGAGGAGCAGAGGAGGACATCTGCTAAAGCGTCTCGTCCGGCGTCTCTGTGTTTGGCTCCTAAAGCAGCAATCAGCTCTTCATCCTCGTCTCTGAGGAAGAGCTCCAGCTCCACGCTGCCCTCTTCACCCTCCTCCAGGAACTACAGCCCCGCACCCGGAGccaagaggAGTCCTGCTGGAAACTCTAAAGAAACTAAAGTGAAGACGAGCATCAGCTCTTGCAGGAAAGTTCTGGAGATCAAACCAAAGGAAACAGCTCCAGTAAAAACAGGCTCCAGGCGTGTCCTTCACTGTAAAGTGTCTATGCAGATCTGTCTGACGCCGGGGTCAGGAAGGACTGGGTCAGCTGAGCGCTCCGGCTCCAAACACAAGAGCCCCGTCAAGTCCCCGAGTCAGTACTTCCAGATCTGTTACTGACCTTCAGACTGGACCCGGGATCGATTGGTTTCTTAGTCAGATCTGGTGCAGAATTAAAGAAATCGGACTGAAGTGGTTTCTGTGGTTTCTTGCTGGATCACCGCTCCatgaatattttcattcatctgAATCATTTCATAATCAGTGTTTAAACCAAACCCTTCATATAtactcattaaaataaaagaacaatatatcc
>XM_043220077.1
TGCAGCATTGACAGAATGAGAGATTATGATTGTTAATTAAACTCTGAGATAATGAACATACGGTGCTCTGATGAATATTACTGATACTTCAGCAGCTCTTCAACTAATtaactgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcttatTGTCTTTCCTTCAGAGTAAAATGATGTGTccttgattttctgttattgtttttttcctatttGTCAGATGTCAGAGTCCAAGGCTAAGAATGAATGTGTGGTTTTGTAGATTTCTGCTGTTTGAGAGTCAGCTTTCAGAAACTGTGTGACATGagaatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagcagatgaaaaagttttgttttcagtCTGAATTACAGGAAAACATGAAGATCTGCTGAAGACGCCTCCAAAGCTTCGGTCAGATCCTCAGACACAATCTGACGTGACatcatgagtgtgtgtgtggattagGAGCTCAactgaggagtgtgtgtgtgtgtgtgtgtgtggatcagaAGCTGAtttgaagagtgtgtgtgtgtgtgtgtggatcagaAGCTGATCTGAGGgaggagcgtgtgtgtgtgtgtgtgtgtggatcaggCGCTGATCtgcgcagtgtgtgtgtgtgtgtgtgtgtgtgtggatcagaCACCGATGGAGGAGCTGATGGAGCGATCGGATGGAGCAGCACAGAGAGACATGTTCAGTGACACAGACTTCATGATCGatgaGCAGAGCTCTCACGTCAGTGGGATGGAGGTGATGGATCGCCTCATGTTTCTGGAGCAGCGTGTCCAGATGCAGGACGACGAGATCCAGCTGCTGAAGATCAACATGACTGATGTTCTGAAGAGACTCGACATCTCAGAGGAGCAGAGGAGGACATCTGCTAAAGCGTCTCGTCCGGCGTCTCTGTGTTTGGCTCCTAAAGCAGCAATCAGCTCTTCATCCTCGTCTCTGAGGAAGAGCTCCAGCTCCACGCTGCCCTCTTCACCCTCCTCCAGGAACTACAGCCCCGCACCCGGAGccaagaggAGTCCTGCTGGAAACTCTAAAGAAACTAAAGTGAAGACGAGCATCAGCTCTTGCAGGAAAGTTCTGGAGATCAAACCAAAGGAAACAGCTCCAGTAAAAACAGGCTCCAGGCGTGTCCTTCACTGTAAAGATCTGTCTGACGCCGGGGTCAGGAAGGACTGGGTCAGCTGAGCGCTCCGGCTCCAAACACAAGAGCCCCGTCAAGTCCCCGAGTCAGTACTTCCAGATCTGTTACTGACCTTCAGACTGGACCCGGGATCGATTGGTTTCTTAGTCAGATCTGGTGCAGAATTAAAGAAATCGGACTGAAGTGGTTTCTGTGGTTTCTTGCTGGATCACCGCTCCatgaatattttcattcatctgAATCATTTCATAATCAGTGTTTAAACCAAACCCTTCATATAtactcattaaaataaaagaacaatatatcc

Function


NR:

description
PREDICTED: echinoderm microtubule-associated protein-like 1 isoform X4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU209893 False 862 TUCP 0.47 2 25996589 25998448
XM_043220076.1 True 1567 mRNA 0.47 7 25996414 26002923
XM_043220077.1 False 1556 mRNA 0.47 7 25996414 26002923

Neighbor


gene id symbol gene type direction distance location
LOC122324854 LOC107575530 coding upstream 2320 25982812 ~ 25994094 (+)
LOC122325520 LOC107712196,LOC107659793,LOC107564338 coding upstream 16036 25979467 ~ 25980378 (+)
LOC122324467 LOC107564327,LOC107712204,LOC107659822,LOC107712203,LOC108411733,LOC108258090 coding upstream 53129 25939571 ~ 25943285 (+)
lamp5 lamp5,zgc:165600,LOC107704368,LOC107557889 coding upstream 107565 25879511 ~ 25888849 (+)
plcb4 plcb4,LOC107564330,LOC107659823 coding upstream 120986 25831015 ~ 25875428 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding downstream 21938 26024861 ~ 26030986 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding downstream 52198 26055121 ~ 26069045 (+)
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding downstream 182753 26185676 ~ 26194962 (+)
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding downstream 215656 26218579 ~ 26229745 (+)
faua fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549 coding downstream 227863 26230786 ~ 26234218 (+)
G142145 NA non-coding upstream 28078 25967720 ~ 25968336 (+)
G142133 NA non-coding upstream 33794 25943346 ~ 25962620 (+)
G142119 NA non-coding upstream 34942 25911376 ~ 25961472 (+)
G142139 NA non-coding upstream 42243 25953800 ~ 25954171 (+)
G142107 NA non-coding upstream 102697 25891158 ~ 25893717 (+)
G142157 NA non-coding downstream 45548 26048471 ~ 26054584 (+)
G142086 LOC107756052,LOC107575297 non-coding downstream 72208 26075131 ~ 26076630 (+)
G142104 NA non-coding downstream 74179 26077102 ~ 26078124 (+)
G142087 NA non-coding downstream 77258 26080181 ~ 26083938 (+)
G142095 NA non-coding downstream 99888 26102811 ~ 26134775 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 167499 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 684987 25250898 ~ 25311427 (+)
G141775 NA other upstream 773305 25221967 ~ 25223109 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other upstream 827993 25163981 ~ 25168421 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other upstream 1001577 24968880 ~ 24994837 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other downstream 840 26003763 ~ 26024232 (+)
G142173 NA other downstream 232498 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 475628 26478551 ~ 26479201 (+)
G142416 NA other downstream 900324 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 969322 26972245 ~ 27093757 (+)

Expression



Co-expression Network