G142163 (LOC107567392,LOC107567390,LOC107659807)


Basic Information

Item Value
gene id G142163
gene name LOC107567392,LOC107567390,LOC107659807
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26123892 ~ 26124310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU209942
CATCAATCAGAAGGTCCCACTGGGGCAGACTGAGTGGACTGGATGTGGAGGTCGCCCAGCAATGTCCCAGCATCAGGACAATGTTGGGGTCAGTCCTCTCCATAATGTGCACTTCAACATACACAGGCTCCCGCAGGACTTTTGTGACGGGATAATCAGCGTCACTGTAGTAGGACGTGTAGGCCTCATCCCCTGAGGCAGCCCTTGGTGACACACTGGCCATTGGCCAGTCTGAGCTCCACCCTGAGAGGTCCAGGAGCAGCTacaggtggaggtggaggaacaGAGTTGACCTCCACAACCAGAGCTTCCACAGATGTTCCAGAGTATCTGCACTGGAAGAGAAGC

Function

NR:

description
PREDICTED: zona pellucida sperm-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209942 True 348 lncRNA 0.55 2 26123892 26124310

Neighbor

gene id symbol gene type direction distance location
entpd5b entpd5b,LOC107756050,LOC107704388 coding upstream 54847 26055121 ~ 26069045 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding upstream 92906 26024861 ~ 26030986 (+)
LOC122324854 LOC107575530 coding upstream 129798 25982812 ~ 25994094 (+)
LOC122325520 LOC107712196,LOC107659793,LOC107564338 coding upstream 143514 25979467 ~ 25980378 (+)
LOC122324467 LOC107564327,LOC107712204,LOC107659822,LOC107712203,LOC108411733,LOC108258090 coding upstream 180607 25939571 ~ 25943285 (+)
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding downstream 61366 26185676 ~ 26194962 (+)
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding downstream 94269 26218579 ~ 26229745 (+)
faua fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549 coding downstream 106476 26230786 ~ 26234218 (+)
trnas-gcu_31 NA coding downstream 433373 26557683 ~ 26557764 (+)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 439346 26563656 ~ 26565704 (+)
G142087 NA non-coding upstream 39954 26080181 ~ 26083938 (+)
G142104 NA non-coding upstream 45768 26077102 ~ 26078124 (+)
G142086 LOC107756052,LOC107575297 non-coding upstream 47262 26075131 ~ 26076630 (+)
G142157 NA non-coding upstream 69308 26048471 ~ 26054584 (+)
G142145 NA non-coding upstream 155556 25967720 ~ 25968336 (+)
G142101 NA non-coding downstream 9708 26134018 ~ 26143317 (+)
G142106 NA non-coding downstream 17618 26141928 ~ 26161972 (+)
G142085 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149 non-coding downstream 83855 26208165 ~ 26216147 (+)
LOC122325287 NA non-coding downstream 87347 26211657 ~ 26212827 (+)
G142300 NA non-coding downstream 166939 26291249 ~ 26301914 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other upstream 84684 25916034 ~ 26039208 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other upstream 99660 26003763 ~ 26024232 (+)
LOC122325160 LOC107564323,LOC107659819 other upstream 120969 25996414 ~ 26002923 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 294977 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 812465 25250898 ~ 25311427 (+)
G142173 NA other downstream 111111 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 354241 26478551 ~ 26479201 (+)
G142416 NA other downstream 778937 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 847935 26972245 ~ 27093757 (+)

Expression


Co-expression Network