LOC122324466 (samd15)


Basic Information

Item Value
gene id LOC122324466
gene name samd15
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26050829 ~ 26054469 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU210061
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgcgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttgtctgGTTTCCATGGCAGCAGCACAGTATGGAGTTCCTTCACTGGAGCTGTGAGGATGTTTCTCTCTGGATCGAGTCTCTTGGTTTCTCTCAGTATCAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgatttatattgtgtgtgtgtgtgtgtgtgtatatatacacaatatatgaTACACAAGAGTGATCTGGTCTACAATAGTGTTATTAAAccgttatttttttgtaaataacacAATGCAAACATTAGCGCAACATTCTTAGAACGTTTGCGAGCGCTTGAGTTATTCAGGTTAGGGTTCATTGTGTcttaatgtgtgtgttctttATCTGAACTGCTGAAAATCAACTAAACTATTGCTTCAGTTCGTGACTCAAAACAGCGAACCCGATCTCCGTTTATACACAGAACTCAAACCGTTTTCAATCCAAACAAAGCCCACACCATCttcatcctcttcatcatcttctGCAGAGCCGCTTCTTTGCTCGGATCCTTCGTGAGTGTTTGTTTCTCAGAGCATCGGACTGAGATCCGATCCGAATTCCTCGCAGGTCGCTCTCGTCTCCACAAAGGCGTTTTCTCGACGAACCGCTGGCGAGTTTACGAACCCTACTACGGCGAGGGCGTGCTGCTTCATATTCATGAGACCCGCGCTCCCATTGGAGGACAAGCGCTCGACGTCATCGGCCTCGTTAATATTCTAGAGGCGCGCTTTCCCATTAGACGACAACATTACGtcaacaatttaaattaatattatataacagcGTAATAATGTTAGGATTTATACAGTCAAATGCATAgcagcaaaacagtaaaaagaatatatttatatactaccactagcacacaaaaaaatatacaataacttacgaatagcatttttttgttttatttgttgcataatttataattaaattattatttgttataatttcatccagacgatccaacggtagctactcggatctcgggttgcctggcggacatctcgacatggatgcaagagtaccatctacagctcaacctgacaaagactgagctgcttgtattccctgccactccaactacacagcatgacttcaccatccagctaggttcttcgtcaattaccccatcatcctcagtcagaaatcttggtgtaatcctcgatgaccaacttaccttcaaagatcacattgcaaagactgctcgatcctgcaggtttgcactacacaacatcagaaagatcaggccctttctaacagagaaagctgcacagctacttgtccaggcccttgtcatttctagactggactactgcaatgctcttctggctggacttccatcgaacacaataaaacctctacaaatgattcagaatgcagcggcacggctggtattcaatgagcccaagagaacccatgttacacctctctttatctccttacattggctaccgattgcagctcgcatcaagttcaaggcactgatgcttgcatatagaacaaccacagactcggc
>XM_043218888.1
gtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttgtctgGTTTCCATGGCAGCAGCACAGTATGGAGTTCCTTCACTGGAGCTGTGAGGATGTTTCTCTCTGGATCGAGTCTCTTGGTTTCTCTCAGTATCAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt
>XR_006247179.1
gtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttgtctgGTTTCCATGGCAGCAGCACAGTATGGAGTTCCTTCACTGGAGCTGTGAGGATGTTTCTCTCTGGATCGAGTCTCTTGGTTTCTCTCAGTATCAGACCCGAGTGGATTCTACAGAACAACAGATGAATTAGTGTCGACGTGCTGTAGAGTTTAGAGTACTGGACAcgcgacctttgacctctgcaGACGGTGGAGAAGCAGCTTTCGCTCCGTCATCATCTCCGCTTGTGCTTTGTTAGCGTCACGTAAGGAAAACGCAGGCTTCCCTTCATCAGCGATATCTGTTGCCTCCGTGCCAGACTCCGCCGAGAATCAACCTCCGTCTGAGAGAAACGATGCTCTGATTCCCGTCTCACTGATCTTTTCAGCTGAAAAACAGCTCAGATTCTCCTGGAAAGCCGTGTTCAGGAGGTTACAGATcagcataattaaaatatgataagTAGTGTAATTATTTTGGTTactttgattatatttttgattcgttttcttaatttaaatcTAACTTTGAATCGTTTTCAAACATTTAGAGCAGGTGAACCTTACAGTGGTATTTGATACAGATTGTAATCTAAAATACATCCTTAAAGCAAATCTAAATGGGAACCCTAACTATAAACTAAATACAGTTAATATTATAACCTGCACTGTAACCAGGACACCTTAGATGAAAGTCTTATGTTTCTTTGTAACTCTGAGAATGTGTTCAGGACTCATTAAAGACCTTTCCTTCTTCAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt
>XR_006247180.1
gtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttgtctgGTTTCCATGGCAGCAGCACAGTATGGAGTTCCTTCACTGGAGCTGTGAGGATGTTTCTCTCTGGATCGAGTCTCTTGGTTTCTCTCAGTATCAGGATCAGACCCGAGTGGATTCTACAGAACAACAGATGAATTAGTGTCGACGTGCTGTAGAGTTTAGAGTACTGGACAcgcgacctttgacctctgcaGACGGTGGAGAAGCAGCTTTCGCTCCGTCATCATCTCCGCTTGTGCTTTGTTAGCGTCACGTAAGGAAAACGCAGGCTTCCCTTCATCAGCGATATCTGTTGCCTCCGTGCCAGACTCCGCCGAGAATCAACCTCCGTCTGAGAGAAACGATGCTCTGATTCCCGTCTCACTGATCTTTTCAGCTGAAAAACAGCTCAGATTCTCCTGGAAAGCCGTGTTCAGGAGGTTACAGATcagcataattaaaatatgataagTAGTGTAATTATTTTGGTTactttgattatatttttgattcgttttcttaatttaaatcTAACTTTGAATCGTTTTCAAACATTTAGAGCAGGTGAACCTTACAGTGGTATTTGATACAGATTGTAATCTAAAATACATCCTTAAAGCAAATCTAAATGGGAACCCTAACTATAAACTAAATACAGTTAATATTATAACCTGCACTGTAACCAGGACACCTTAGATGAAAGTCTTATGTTTCTTTGTAACTCTGAGAATGTGTTCAGGACTCATTAAAGACCTTTCCTTCTTCAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt
>XR_006247181.1
CCttctcatatattttaaatgtagttagtAAACGAGGAGAAATTATTCACAATGCAGAAGTAAGAAGCAGATGTTTTATTTCGTTCACGTTCTCGAGGATCAGACCCGAGTGGATTCTACAGAACAACAGATGAATTAGTGTCGACGTGCTGTAGAGTTTAGAGTACTGGACAcgcgacctttgacctctgcaGACGGTGGAGAAGCAGCTTTCGCTCCGTCATCATCTCCGCTTGTGCTTTGTTAGCGTCACGTAAGGAAAACGCAGGCTTCCCTTCATCAGCGATATCTGTTGCCTCCGTGCCAGACTCCGCCGAGAATCAACCTCCGTCTGAGAGAAACGATGCTCTGATTCCCGTCTCACTGATCTTTTCAGCTGAAAAACAGCTCAGATTCTCCTGGAAAGCCGTGTTCAGGAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt
>XR_006247182.1
CCttctcatatattttaaatgtagttagtAAACGAGGAGAAATTATTCACAATGCAGAAGTAAGAAGCAGATGTTTTATTTCGTTCACGTTCTCGAGGATCAGACCCGAGTGGATTCTACAGAACAACAGATGAATTAGTGTCGACGTGCTGTAGAGTTTAGAGTACTGGACAcgcgacctttgacctctgcaGACGGTGGAGAAGCAGCTTTCGCTCCGTCATCATCTCCGCTTGTGCTTTGTTAGCGTCACGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt

Function

symbol description
samd15 Orthologous to human SAMD15 (sterile alpha motif domain containing 15).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210061 True 2098 TUCP 0.44 3 26050829 26054469
XM_043218888.1 False 621 mRNA 0.46 3 26052206 26054369
XR_006247179.1 False 1264 transcript 0.43 3 26052206 26054369
XR_006247180.1 False 1270 transcript 0.43 3 26052206 26054369
XR_006247181.1 False 855 transcript 0.46 3 26052206 26054178
XR_006247182.1 False 689 transcript 0.45 3 26052206 26054178

Neighbor

gene id symbol gene type direction distance location
lrfn5b lrfn5b,LOC107659815,LOC107564320,LOC107712211,LOC108411613,LOC108257655 coding downstream 1062 26036394 ~ 26049767 (-)
magl NA coding downstream 74001 25963983 ~ 25976828 (-)
LOC122324391 LOC107712205,LOC107564326,LOC107659794 coding downstream 91127 25944134 ~ 25959702 (-)
pak5 pak5,LOC107659820,LOC107731598 coding downstream 115757 25888169 ~ 25935072 (-)
LOC122325519 plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323 coding downstream 274666 25754500 ~ 25776163 (-)
znf410 LOC107659809,LOC107712212,LOC107550151 coding upstream 17936 26072405 ~ 26079546 (-)
cipcb NA coding upstream 28620 26083089 ~ 26087970 (-)
LOC122324579 LOC107756053,LOC107659807,LOC107756058,LOC107659806 coding upstream 46864 26101333 ~ 26103223 (-)
LOC122324575 LOC107659807,LOC107756058,LOC107659806 coding upstream 57007 26111476 ~ 26113724 (-)
LOC122324578 LOC107659807,LOC107659806,LOC107756058 coding upstream 68884 26123353 ~ 26125448 (-)
G142245 NA non-coding downstream 17631 26017371 ~ 26033198 (-)
G142261 NA non-coding downstream 38581 26010650 ~ 26012248 (-)
G142260 NA non-coding downstream 40441 26006269 ~ 26010388 (-)
G142201 plcb4,LOC107557901,LOC106608066,LOC107659823,LOC107564330 non-coding downstream 185750 25838372 ~ 25865079 (-)
G142015 NA non-coding downstream 454017 25474206 ~ 25596812 (-)
G142273 LOC107756044,LOC107737847,LOC107556799,LOC107567391,LOC107567392,LOC107713860 non-coding upstream 95422 26149891 ~ 26174879 (-)
G142282 NA non-coding upstream 135594 26190063 ~ 26191918 (-)
G142280 NA non-coding upstream 175837 26230306 ~ 26231483 (-)
G142297 NA non-coding upstream 213443 26267912 ~ 26268125 (-)
G142299 NA non-coding upstream 215168 26269637 ~ 26270044 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other downstream 296821 25747667 ~ 25754008 (-)
G142058 NA other downstream 400736 25648492 ~ 25650093 (-)
mettl24 LOC107738893 other downstream 642054 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other downstream 673413 25326508 ~ 25377416 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 1199050 24838652 ~ 24851779 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 33946 26088415 ~ 26096971 (-)
G142281 NA other upstream 131191 26185660 ~ 26187919 (-)
G142278 NA other upstream 177555 26232024 ~ 26234245 (-)
rps29 NA other upstream 428852 26483321 ~ 26560387 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other upstream 868346 26922815 ~ 26924987 (-)

Expression


Co-expression Network