tex55 (LOC107560331,LOC107702887)


Basic Information

Item Value
gene id tex55
gene name LOC107560331,LOC107702887
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27476094 ~ 27478227 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU210694
CCGAGGTCTTCTGAGGTATTCTTTTTTTCCGAAAATAGATACGAAAATTGGCATTGACCGCAGAAGCGGCGTGTCAGCCGTGCGAACGGAGTTTTCTCCATTTTCAACAAACCTTTTCGAGACCCCTCACGATTCTTTATCAAAGGCGCTGTCCCGGGGAACCGTGCCCGATGACATCATCCCCCGCTCTTTGTATACAGTTGCTAGGGGTTACAGGGTGACATTTCAAACAGTCCTGCTCTAGATGTGCTCGAGATACGCGGTCCGATTTCTGTATTAACACAAAACAACGGGCGAAATACAAAGtttgctatttattttgaactgaGGCTATACTAGCTATACAGtataaactttaaaactttGTGAGATGGCAGATTCTGGTCTACCAGAAAAAGCGCTTATCACCGAGAGTGCGGAGAACATTCGTACTACCTCCGTTTTCACGGACCCGTATGAACGCTCTTTTAACTATATGGAGACTCACAGTATTCTTCAGATTTTTCAGGACATCACAGAGAGACTGGTTTTTGATAGACCAGACGATCCACTTCAGTTCATGTTAGAACAGGTGCAAATGAAGATCAAAATCCGTGATGAGTCAAGCAGCACATTTGTGAAATCATAATGAATTCTAAAGCAAAGCAGCAAGGGCTTTGCAACAAATTGAATCCAagtttattcttttatttatatatttctttaaataaggTGTATTGGTTGCTGCAGGTCATTCCGTGACTCTGCATTGTTGTTTCCAAGCAACTGTCTTCAGATTTTTGTTCTCCAAATTTACCATGTTTTGTCAGAATTTTTAGACGGTAACAACATTCTGAAATCTTAATAATCTTAATGTCTAAACATCTCAATGAACACTCAAGTGGCAAGTTAAag
>XM_043219811.1
AGTGTAAAATATAGTGTCCGGATATTGGCAGCGATGTAGTTATAATGTAGGACGTCCCACTCAGATTTATGTCAAAAGTTCAAAGAGACACGTTTACGAAGAACGAGCCATTTCTTGCgcgtatattatattatttcgaTAAAAGCCGTTCGACCTTGGCTCACGTAAATATTTCGTCACATGTAACAATCCCTCGCCTCCATAATATCGTTCCTCTTGGTGCGAGGTTTCCGGTTTGATTGCAAGCTTTTCTTGATATTGAGTTCCCCCTTTCGGTTATGAACGCGAACAGCAGCGTTTAACCGAGAGGTTCACCGGGGGACACGCACACCGTCTGCCCTACATAAAATGCACCCATTGTAGGCCGAGGTGTCAGCTGAGGACGACTCGCAACCTAGAAACGGCGGTTGGCCCCTCCTTCCCTTTGTCAGTCCTATTGTAAAACGTTAGTCCGAGGTCTTCTGAGGTATTCTTTTTTTCCGAAAATAGATACGAAAATTGGCATTGACCGCAGAAGCGGCGTGTCAGCCGTGCGAACGGAGTTTTCTCCATTTTCAACAAACCTTTTCGAGACCCCTCACGATTCTTTATCAAAGGCGCTGTCCCGGGGAACCGTGCCCGATGACATCATCCCCCGCTCTTTGTATACAGTTGCTAGGGGTTACAGGGTGACATTTCAAACAGTCCTGCTCTAGATGTGCTCGAGATACGCGGTCCGATTTCTGTATTAACACAAAACAACGGGCGAAATACAAAGtttgctatttattttgaactgaGGCTATACTAGCTATACAGtataaactttaaaactttGTGAGATGGCAGATTCTGGTCTACCAGAAAAAGCGCTTATCACCGAGAGTGCGGAGAACATTCGTACTACCTCCGTTTTCACGGACCCGTATGAACGCTCTTTTAACTATATGGAGACTCACAGTATTCTTCAGATTTTTCAGGACATCACAGAGAGACTGGTTTTTGATAGACCAGACGATCCACTTCAGTTCATGTTAGAACAGGTGCAAATGAAGATCAAAATCCGTGATGAGTCAAGCAGCACATTTGTGAAATCATAATGAATTCTAAAGCAAAGCAGCAAGGGCTTTGCAACAAATTGAATCCAagtttattcttttatttatatatttctttaaataaggTGTATTGGTTGCTGCAGGTCATTCCGTGACTCTGCATTGTTGTTTCCAAGCAACTGTCTTCAGATTTTTGTTCTCCAAATTTACCATGTTTTGTCAGAATTTTTAGACGGTAACAACATTCTGAAATCTTAATAATCTTAATGTCTAAACATCTCAATGAACACTCAAGTGGCAAG

Function

NR:

description
PREDICTED: uncharacterized protein C3orf30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210694 False 894 lncRNA 0.40 4 27476094 27477776
XM_043219811.1 True 1339 mRNA 0.42 4 27476100 27478227

Neighbor

gene id symbol gene type direction distance location
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding downstream 57674 27409502 ~ 27418420 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding downstream 71699 27387290 ~ 27404395 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding downstream 136995 27336495 ~ 27339099 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding downstream 328049 27146476 ~ 27148045 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding downstream 527199 26947330 ~ 26948895 (-)
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding upstream 95636 27573863 ~ 27577372 (-)
LOC122325076 ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760 coding upstream 107404 27585631 ~ 27602190 (-)
G142614 NA non-coding downstream 50 27475610 ~ 27476044 (-)
G142590 LOC107662078,LOC107560333,LOC107719753 non-coding downstream 1293 27471784 ~ 27474801 (-)
G142606 NA non-coding downstream 21202 27454693 ~ 27454892 (-)
G142586 NA non-coding downstream 24873 27446476 ~ 27451221 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding downstream 98567 27375209 ~ 27377527 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other downstream 218612 27229803 ~ 27257482 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 551107 26922815 ~ 26924987 (-)
rps29 NA other downstream 915707 26483321 ~ 26560387 (-)
G142278 NA other downstream 1241849 26232024 ~ 26234245 (-)
G142281 NA other downstream 1288175 26185660 ~ 26187919 (-)

Expression


Co-expression Network