LOC122324271 (rrm2,LOC107668265,LOC107549099,LOC107756588)


Basic Information

Item Value
gene id LOC122324271
gene name rrm2,LOC107668265,LOC107549099,LOC107756588
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15288771 ~ 15292255 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218576.1
AAAGGACCAAACAAAGCGGTGAAGTCTGCCTTTTTCTTATTGGCTGAGAATGAGCGCCAAGAATCGAATATAAAAAGAATCTCCGACGTTCGCTTTTCGTTTTCTTCCCTCCAGTTGGACTGTTAGATCTTCGagcttttgcttttctgttttatttatttgtagctGACTTTGTTTTAGAAGTTGttcctgtttttttaaacttttattcctattttctgttttacttAACACTTCAAGCTTTAACAATGATGTCCACTCGCTCTCCACTGAAAACTAAGAAtgaaaacaccatttctgccaAAATCAATAGCATGTCCTTGGTAGACAAAGAAAACACGccGCCCAGTCTGAACTCCACCAGAATCCTGGCGTCCAAAACGGCGCGCAAAATCTTTGATGATTCAGAGgagCAGACAAAAGCTAGGAAAGGATCTGTGGAGGAGGAGCCCCTTCTGAAGGAGAACCCCCACCGCTTTGTCATTTTCCCAATTCAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCCTCTTTCTGGACAGCAGAGGAGGTTGATCTTTCCAAAGATCTTCAGCACTGGGACTCCCTGAAAGACGACGAGAGATACTTCATCTCTCACGTTTTGGCTTTTTTTGCTGCGAGCGATGGCATTGTCAATGAGAACTTGGTGGAACGATTTACTCAGGAGGTCCAGGTGACCGAAGCCCGTTGCTTCTACGGTTTTCAGATAGCCATGGAAAACATCCACTCCGAAATGTACAGTCTGCTGATTGACACTTACATCAAAGATCCCCAAGAGAGAGAATATCTTTTCAACGCCATTGAGACGATGCCTTGCGTAAAGAAGAAGGCTGACTGGGCTCTTAACTGGATTGGTgacaaaaatgcacaatatgGGGAGAGAGTGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCCATTTTCTGGTTGAAGAAGAGAGGACTGATGCCTGGACTCACCTTCTCCAATGAACTTATTAGCAGAGATGAGGGTCTTCATTGTGACTTTGCCTGCCTCATGTTCAAGCACTTGGTCAACAAACCTTCAGAAGCAACCGTGAAGAAAATCATCATGAATGCAGTTGAAATCGAACAGGAATTCCTGACTGATGCTCTGCCAGTAAAGCTAATTGGCATGAATTGTGACCTGATGAAGCAATACATTGAGTTTGTGGCTGACAGACTTCTGCTGGAGCTGGGTTTTGACAAGaTCTATAAAGTGGAAAATCCTTTCGACTTCATGGAGAACATTTCTTTGGAGGGCAAAACCAACTTCTTTGAGAAGCGAGTAGGAGAGTACCAGCGGATGGGAGTTATGTCCGGACCCACAGATAACACTTTCAGACTGGATGCTGATTTTTAGAGACTCGATCCGAGTGCTTCAATGGACACATTATGAACTCTGACACTTATTTCTAAAAtctacaggttttttttttcctccgatttttaattatctaataaatgtctttttatttttgttgttttaaataataataaaaagaaccaACATACTTTTTGCTTTGCCTTTTGGACATGGTGAAATGGTTGTCTACAACTTATCTgctcattttattgtaaaatgcgTCTCTTCACTGCAATTTGTTTCTGAAGTTCCATTTGTTATTTAGTAAAGGGGTATGGtgtatatgaataaaaagtactttttttttattttcaacgtTCATGGAACAGGAAAGTAA

Function

symbol description
rrm2 Predicted to enable ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; proliferative region; and tail bud. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2).

NR:

description
PREDICTED: ribonucleoside-diphosphate reductase subunit M2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0005737 cytoplasm cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218576.1 True 1749 mRNA 0.41 10 15288771 15292255

Neighbor

gene id symbol gene type direction distance location
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 4478 15281002 ~ 15284293 (-)
LOC122325338 scg5,LOC107549096,LOC107721307,LOC107756590,LOC107601900,LOC107668261 coding downstream 8343 15278218 ~ 15280428 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding downstream 10700 15276107 ~ 15278071 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding downstream 36146 15185712 ~ 15252625 (-)
chrm5b LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776 coding downstream 113357 15166406 ~ 15175414 (-)
klf11a klf11,klf11a,LOC107549098,LOC107693793,LOC107668260,LOC107756587,LOC107601876 coding upstream 2263 15294518 ~ 15297908 (-)
taf1b LOC107575862 coding upstream 10551 15302806 ~ 15307283 (-)
cpsf3 cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862 coding upstream 51689 15343944 ~ 15349221 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding upstream 73703 15365958 ~ 15370030 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding upstream 124712 15416967 ~ 15418769 (-)
LOC122324712 NA non-coding downstream 445035 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 495062 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 709870 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 763748 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 860519 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 31317 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 39546 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 78353 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 224588 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 391921 15684176 ~ 15711053 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 273502 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 285569 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 842846 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1090243 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1520947 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 550143 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 550643 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 551154 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 552099 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 697894 15990149 ~ 15993645 (-)

Expression


Co-expression Network