mixl1 (LOC107743324,LOC107697096,LOC107726752,LOC107678837,LOC107603100,LOC107549665)


Basic Information

Item Value
gene id mixl1
gene name LOC107743324,LOC107697096,LOC107726752,LOC107678837,LOC107603100,LOC107549665
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22767835 ~ 22769876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218593.1
GTCCTGCCGCCCCACAGCTGACTTTGATCACCTCCGAAGGAAGGCTGGCCCGCTGGATATATAATGCCATTCTTAGCGAAGTCGAATCACTCCCGGCTGAACAACAGTAGTACTGGATCACAATGGCAGTCGTGCACGGAAACCTGGGGAATGGACACTTAAAACAATTCCAGCTGTTTCCTACGACGGATATGGAAAGGAGGAACGTGCACGCGACAGCAGATTACGCCGCTCCGGACAGGATGAAGTTCCTCCACGGCGCGTCCAGAGCGGAAAGCGCGAGCTTGTTTACGCACCGCAGAAAACGCACCAACTTCACGCAGCAGCAGATCGACGTCCTGGAGAAGGTTTACCTGGACACCAAATACCCCGACATTTATTTAAGAGAGAAGCTCGAGGCGCTGACCGGCTTGCCAGAGTCGAGAATTCAGgtctgGTTCCAGAACAGGAGAGCCAAGTCAAGACGGCAAGTGGGAATTCCTCTTCCAAATAAGTCCAGTGGAAATGTCCTGACCCCCATCGGTCTCCTTATGAACCAGTTTACGACGCATCAGAACCACACCGGCCTGGAGACACAAAGACCGGCAAACTTCAGCCAACAGCTGATCAACGCCGACGAGAAGATCTGCGCCATGAAAGGCGACATGTACAGCCCAACTACAATTTCGTGCATGTTCGGCAGAACCGAGGAGAACCAGATCAAGACGGATCACCTGAGTGTTGTGGTGCCACGCAATTACGCACAGCAGTATCCAAAAGGACACGGACAGTTCATGAACACAAGCCATACTGAGCCTCCAATGAAGCAGTTTTTGGTGGAGTATGATAACTTCCCTCCGAACAAGACCATCGGGCCAGAGATGAAGGTTGTTATTCCACCTCTCCCTTCGCAGAATAACTTCGTGATGTCTTCATCGTCCCCCAAACATGTCGCCTGCTCCGTCCAAAACCTACCAGTAAAGGTTCAGCCGGAAAGTTTTGGAACTTTCTCTCCCATTAGAGCAAGCGAAGCCGTCGAGTTCTCAGACTCCGACTCGGATTGGGAAAGAGAAGCCATGTCTGGTTTTAACGTGTTCATGTAACGTTTCCACAATTTGTCGCTCGGACTTTATCTGAAGctttgaagaacatttttaagctttgaaaatcagatatttattgtatatttcagatattattgtatattgttATGTGCGATTATCACAAAATATGGGTGTGAAGGAAAACATTCTAcataaatttttct
>XM_043218594.1
GCGTCCTGCCGCCCCACAGCTGACTTTGATCACCTCCGAAGGAAGGCTGGCCCGCTGGATATATAATGCCATTCTTAGCGAAGTCGAATCACTCCCGGCTGAACAACAGTAGTACTGGATCACAATGGCAGTCGTGCACGGAAACCTGGGGAATGGACACTTAAAACAATTCCAGCTGTTTCCTACGACGGATATGGAAAGGAGGAACGTGCACGCGACAGATTACGCCGCTCCGGACAGGATGAAGTTCCTCCACGGCGCGTCCAGAGCGGAAAGCGCGAGCTTGTTTACGCACCGCAGAAAACGCACCAACTTCACGCAGCAGCAGATCGACGTCCTGGAGAAGGTTTACCTGGACACCAAATACCCCGACATTTATTTAAGAGAGAAGCTCGAGGCGCTGACCGGCTTGCCAGAGTCGAGAATTCAGgtctgGTTCCAGAACAGGAGAGCCAAGTCAAGACGGCAAGTGGGAATTCCTCTTCCAAATAAGTCCAGTGGAAATGTCCTGACCCCCATCGGTCTCCTTATGAACCAGTTTACGACGCATCAGAACCACACCGGCCTGGAGACACAAAGACCGGCAAACTTCAGCCAACAGCTGATCAACGCCGACGAGAAGATCTGCGCCATGAAAGGCGACATGTACAGCCCAACTACAATTTCGTGCATGTTCGGCAGAACCGAGGAGAACCAGATCAAGACGGATCACCTGAGTGTTGTGGTGCCACGCAATTACGCACAGCAGTATCCAAAAGGACACGGACAGTTCATGAACACAAGCCATACTGAGCCTCCAATGAAGCAGTTTTTGGTGGAGTATGATAACTTCCCTCCGAACAAGACCATCGGGCCAGAGATGAAGGTTGTTATTCCACCTCTCCCTTCGCAGAATAACTTCGTGATGTCTTCATCGTCCCCCAAACATGTCGCCTGCTCCGTCCAAAACCTACCAGTAAAGGTTCAGCCGGAAAGTTTTGGAACTTTCTCTCCCATTAGAGCAAGCGAAGCCGTCGAGTTCTCAGACTCCGACTCGGATTGGGAAAGAGAAGCCATGTCTGGTTTTAACGTGTTCATGTAACGTTTCCACAATTTGTCGCTCGGACTTTATCTGAAGctttgaagaacatttttaagctttgaaaatcagatatttattgtatatttcagatattattgtatattgttATGTGCGATTATCACAAAATATGGGTGTGAAGGAAAACATTCTAcataaatttttcttt

Function

NR:

description
homeobox protein Mix.1-like isoform X2

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24900 MIXL1; homeobox protein MIXL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218593.1 False 1246 mRNA 0.49 3 22767837 22769874
XM_043218594.1 True 1247 mRNA 0.49 3 22767835 22769876

Neighbor

gene id symbol gene type direction distance location
zpax1 LOC107603073 coding upstream 3956 22758359 ~ 22763879 (+)
ttc32 ttc32,LOC107678832,LOC107743292,LOC107697098 coding upstream 9856 22755992 ~ 22757979 (+)
laptm4a laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288 coding upstream 23558 22739633 ~ 22744277 (+)
mark3b mark3b,LOC107697167,LOC107743287,LOC107678848,LOC108412004,LOC107726756 coding upstream 29708 22686572 ~ 22738127 (+)
runx2b runx2b,runx2,LOC107678859,LOC107726745,LOC107697170,LOC107603075 coding upstream 105517 22622388 ~ 22662318 (+)
LOC122325427 NA coding downstream 17589 22787465 ~ 22789136 (+)
efr3bb efr3bb,ccl33.2,LOC107726755,LOC107678842,LOC107697142,LOC107549699 coding downstream 37283 22807159 ~ 22839446 (+)
LOC122325208 LOC107726734 coding downstream 108874 22878750 ~ 22882976 (+)
LOC122325206 LOC107726734 coding downstream 114231 22884107 ~ 22888671 (+)
LOC122325205 LOC107726734 coding downstream 119928 22889804 ~ 22893878 (+)
G141091 NA non-coding upstream 210333 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 225303 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 226508 22541118 ~ 22541327 (+)
LOC122324401 NA non-coding upstream 652968 22098405 ~ 22114867 (+)
G141121 NA non-coding downstream 150817 22920693 ~ 22923128 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 296711 23066587 ~ 23073665 (+)
LOC122324747 NA non-coding downstream 424745 23194621 ~ 23206082 (+)
G141207 NA non-coding downstream 560315 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 618616 23388492 ~ 23408824 (+)
matn3a matn3a other upstream 13674 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 250152 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 291061 22471761 ~ 22476774 (+)
G140785 NA other upstream 923134 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 1565873 21168775 ~ 21201962 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 72929 22842805 ~ 22860327 (+)
pln NA other downstream 573839 23343715 ~ 23351655 (+)
G141475 NA other downstream 1302995 24072871 ~ 24074423 (+)
G141524 NA other downstream 1670367 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1687114 24456990 ~ 24482661 (+)

Expression


Co-expression Network