sccpdhb (sccpdhb,LOC107698360,LOC108439827,LOC107553427,LOC107578761)


Basic Information

Item Value
gene id sccpdhb
gene name sccpdhb,LOC107698360,LOC108439827,LOC107553427,LOC107578761
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18116114 ~ 18123136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218596.1
TATGCAACTATTGTGGTAATATTACCTTTCCAGCACGAGGTGTCTCTCTACTTCAGTGTTTGACAGTCTCAGGAATCTTCGCTCACAAACTGTCTGGTTTATGGTTAAGCTACACTTATCAGAGACACAATCTGATCCACTAAACGTCTATATTTTGCACCGTACAGCGACAGCAGGAGAGCAACAGCGGTCGCCCTGACCTCGCCTGTGCGTTTGCTTCAAACACGGATCACGCGCACAATGGCGACGCTCACGACGTCAAGCAAAAGACCGTACCACATCGTAGTGTTCGGAGCGACCGGTTTTACCGGCCAGTTTGTAGTGGAGGAGGTGGCGCGGACGTGTAACGAGGGTCCGGGAAAGACGTTACAATGGGCTGTAGCCGGACGAAACCGCGACCGACTGGAAAAAACACTCATTCAGGCAGCTGACGCTCTGCGTAAACCAGAGCTGAAGTGTGTGGAGGTTATTGTAGCAGATGTAGACGAACCGGAGTCGTTGGCCATCATGTGCAAACAAGGAATCATTGTGCTCAACTGCGTGGGACCATACAGATTCTATGGAGAGCCCGTGGTAAAGGCCTGCATAGAGAATGGAGCCCACTGCATTGATATCTGTGGAGAACCACAGtttttagagGGCATACAGTTGAACTACCATAGCAAAGCTCAGGAGAATGGTGTATATATCATTGGAAGCTGTGGGTTCGATTCAATACCAGCAGATATGGGCATCCTTTTTACACGGGATCACTTCAAAGGAACGCTCACTGCTGTGGAGAGCTTCCTAACAATCAACACGGGACCTGAGGGAGGACGTGGCCATGATGCAACGTGGCAGTCAGCCATCTTTGGCTTCGCTGACAGTGCCAGTCTCAGAAGAATAAGGAAGAAGTTTGGGCATAAACCTCTGCCAGCCGTTGGCGCTAGAATCAAAAAGAGGGGAGCTCTGTTCTTCAGTAAGGAGATTGAGCAGTATGCCATTCCCTTCATGGGCTCAGATCCGTCTGTGGTGCGACGGACTCAGCGCTATATGCACGAGGAACATAAACACAGCCCTGTTCAGTATATGGCATATGTAGGTATCGGTGGTCTTTTCTCCGTGCTGAAGACCCTCTTTGCAGGCGTTGTCTTCTGGTTCATGGTCAAATTTAGTCTTGGCAGGGGATTGCTTACTCAGtttcCAGAATTCTTCTCATTTGGTTTGTTCTCCAAGACCGGACCAACAAGAAAGCAGATGGATGGAACCTCTTTCTGCCTGAGGTTCATGGGGGAGGGCTACACGACCGGTCAGGACCTTTCTCGGGGCAAGCCAGATGCCACAATCAGCACTGAAATAACAGGACCGGagccaggatacattgcAACACCGATTACCATGGTGCAGGCAGCTATTACGCTGCTTAACGAACCTCAGTGTCTCCCTAACAACGGTGGTGTGTACACTCCAGGAACAGCTTTTGCAAGAACTACCCTAGTGGACCGTCTGAACAAACACGGAATCCAGTTCTCACTGAAGAACGGACAACAGACATGAGTGCTCATCATCAGCCTGGTTGAGCtcttttgttatataaatgaaaaaaaatatcgcATTGAGTTGTGTAGCCAAAAGTGTGAGAGCATCCTTCTGAAAAAATTTAGGCAAAAGTTTTTTTCCTTAAACTTTAAGGAAACGGATGTGAAATACTAtgatttatagcatttattaatttatcttaTGAAAAATAGATTATCAATAAATCCAACACAATGTAGatcatacaaacacatacatgaaGGGGTGAGCCCATACAGTTTTCTCAGTgtggcaaacacacacacacaggccagtCCCCACAATGTCAGGttttgtcacggtgtggtttagcgtGAAGGAGCATTCGACGAGAATAAATTAACTTGAATAGTTCTAATCCTCTTTAAAcggacaaaaaaataatatacaggtaggcagacaggcagaacaaaaaccacacgtatTAACCTCGACGAtcaaacaaactgaatacaaacacacaggacttaaatacacaaggaaatcactaaattaacgagacacaggtgaagacacTGACCCAATTAACAGGAACAAAGGTAGggaacacagagcacatggcacaagatcaaaacaacaacaaaggatccaaagacgtgacaggtTTCAAGTAAATTTAACTCTAACCTTTGCAGTGTCTTAAACAAATATAGATGAGTGTGTTAGTGTAAACACTGCATGTATGGGTGTATCTTCAAATAGGGCAACCAGGGGTTaactaaatgttattaaaactaCAATTTAAACAACACAAATTTTCATGTCAGGTTTTCATGTCAAATTCTGGTTTTACTATCCTTGTAaatgtacgcacacacacacacacacacacacacacacttcaaaatcAGATCAAAGTCCTACTGCAAGATTTGGTGATgctgcaaataaaacatttttgaaacatg
>XM_043218597.1
TATGCAACTATTGTGGTAATATTACCTTTCCAGCACGAGGTGTCTCTCTACTTCAGTGTTTGACAGTCTCAGGAATCTTCGCTCACAAACTGTCTGGTTTATGGTTAAGCTACACTTATCAGAGACACAATCTGATCCACTAAACGTCTATATTTTGCACCGTACAGCGACAGCAGGAGAGCAACAGCGGTCGCCCTGACCTCGCCTGTGCGTTTGCTTCAAACACGGATCACGCGCACAATGGCGACGCTCACGACGTCAAGCAAAAGACCGTACCACATCGTAGTGTTCGGAGCGACCGGTTTTACCGGCCAGTTTGTAGTGGAGGAGGTGGCGCGGACGTGTAACGAGGGTCCGGGAAAGACGTTACAATGGGCTGTAGCCGGACGAAACCGCGACCGACTGGAAAAAACACTCATTCAGGCAGCTGACGCTCTGCGTAAACCAGAGCTGAAGTGTGTGGAGGTTATTGTAGCAGATGTAGACGAACCGGAGTCGTTGGCCATCATGTGCAAACAAGGAATCATTGTGCTCAACTGCGTGGGACCATACAGATTCTATGGAGAGCCCGTGGTAAAGGCCTGCATAGAGAATGGAGCCCACTGCATTGATATCTGTGGAGAACCACAGtttttagagGGCATACAGTTGAACTACCATAGCAAAGCTCAGGAGAATGGTGTATATATCATTGGAAGCTGTGGGTTCGATTCAATACCAGCAGATATGGGCATCCTTTTTACACGGGATCACTTCAAAGGAACGCTCACTGCTGTGGAGAGCTTCCTAACAATCAACACGGGACCTGAGGGAGGACGTGGCCATGATGCAACGTGGCAGTCAGCCATCTTTGGCTTCGCTGACAGTGCCAGTCTCAGAAGAATAAGGAAGAAGTTTGGGCATAAACCTCTGCCAGCCGTTGGCGCTAGAATCAAAAAGAGGGGAGCTCTGTTCTTCAGTAAGGAGATTGAGCAGTATGCCATTCCCTTCATGGGCTCAGATCCGTCTGTGGTGCGACGGACTCAGCGCTATATGCACGAGGAACATAAACACAGCCCTGTTCAGTATATGGCATATGTAGGTATCGGTGGTCTTTTCTCCGTGCTGAAGACCCTCTTTGCAGGCGTTGTCTTCTGGTTCATGGTCAAATTTAGTCTTGGCAGGGGATTGCTTACTCAGtttcCAGAATTCTTCTCATTTGGTTTGTTCTCCAAGACCGGACCAACAAGAAAGCAGATGGATGGAACCTCTTTCTGCCTGAGGTTCATGGGGGAGGGCTACACGACCGGTCAGGACCTTTCTCGGGGCAAGCCAGATGCCACAATCAGCACTGAAATAACAGGACCGGCGGTGGTGTGTACACTCCAGGAACAGCTTTTGCAAGAACTACCCTAGTGGACCGTCTGAACAAACACGGAATCCAGTTCTCACTGAAGAACGGACAACAGACATGAGTGCTCATCATCAGCCTGGTTGAGCtcttttgttatataaatgaaaaaaaatatcgcATTGAGTTGTGTAGCCAAAAGTGTGAGAGCATCCTTCTGAAAAAATTTAGGCAAAAGTTTTTTTCCTTAAACTTTAAGGAAACGGATGTGAAATACTAtgatttatagcatttattaatttatcttaTGAAAAATAGATTATCAATAAATCCAACACAATGTAGatcatacaaacacatacatgaaGGGGTGAGCCCATACAGTTTTCTCAGTgtggcaaacacacacacacaggccagtCCCCACAATGTCAGGttttgtcacggtgtggtttagcgtGAAGGAGCATTCGACGAGAATAAATTAACTTGAATAGTTCTAATCCTCTTTAAAcggacaaaaaaataatatacaggtaggcagacaggcagaacaaaaaccacacgtatTAACCTCGACGAtcaaacaaactgaatacaaacacacaggacttaaatacacaaggaaatcactaaattaacgagacacaggtgaagacacTGACCCAATTAACAGGAACAAAGGTAGggaacacagagcacatggcacaagatcaaaacaacaacaaaggatccaaagacgtgacaggtTTCAAGTAAATTTAACTCTAACCTTTGCAGTGTCTTAAACAAATATAGATGAGTGTGTTAGTGTAAACACTGCATGTATGGGTGTATCTTCAAATAGGGCAACCAGGGGTTaactaaatgttattaaaactaCAATTTAAACAACACAAATTTTCATGTCAGGTTTTCATGTCAAATTCTGGTTTTACTATCCTTGTAaatgtacgcacacacacacacacacacacacacacacttcaaaatcAGATCAAAGTCCTACTGCAAGATTTGGTGATgctgcaaataaaacatttttgaaacatg

Function

symbol description
sccpdhb Predicted to enable oxidoreductase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet; mitochondrion; and plasma membrane. Is expressed in neural tube; primary neurons; and spinal cord. Orthologous to human SCCPDH (saccharopine dehydrogenase (putative)).

NR:

description
PREDICTED: saccharopine dehydrogenase-like oxidoreductase isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218596.1 True 2465 mRNA 0.45 12 18116114 18123136
XM_043218597.1 False 2383 mRNA 0.45 11 18116114 18123136

Neighbor

gene id symbol gene type direction distance location
stmn4 stmn4,LOC107696168,LOC107698365,LOC107599074,LOC107732359,LOC108257558 coding downstream 79748 18030682 ~ 18036366 (-)
paqr8 paqr8,LOC107698331,LOC107732380,LOC107553447 coding downstream 94538 18018219 ~ 18021576 (-)
LOC122325023 LOC107553448,LOC107732384,LOC107726442,LOC107599077,LOC107696167 coding downstream 98754 18014452 ~ 18017360 (-)
znf395b LOC107698366,LOC107553496,LOC107732419,LOC107696161 coding downstream 102587 18007946 ~ 18013527 (-)
si:ch211-63o20.7 si:ch211-63o20.7,LOC107732427,LOC107726431,LOC107698369,LOC107599081,LOC108439852 coding downstream 120852 17989312 ~ 17995262 (-)
cnstb LOC107732406,LOC107698361,LOC107719106,LOC107696101,LOC107553493 coding upstream 495 18123631 ~ 18133228 (-)
kif26bb LOC107732424,LOC107553492,LOC107698359,LOC107719102,LOC107696093,LOC107577345 coding upstream 11052 18134188 ~ 18151673 (-)
lft1 LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102 coding upstream 38124 18161260 ~ 18163325 (-)
fzd3a LOC107732395,LOC107599066,LOC107553488,LOC107719091 coding upstream 91434 18214570 ~ 18231055 (-)
pla2g7 pla2g7,LOC107698350,LOC107732404,LOC107553483,LOC107696191,LOC107601536 coding upstream 202791 18325927 ~ 18331052 (-)
G139591 NA non-coding downstream 8711 18087212 ~ 18107403 (-)
LOC122324448 NA non-coding downstream 208499 17893736 ~ 17907615 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding downstream 316248 17795484 ~ 17799866 (-)
G139565 NA non-coding downstream 322042 17789198 ~ 17794072 (-)
G139387 NA non-coding downstream 499606 17615793 ~ 17616508 (-)
G139651 LOC107696185,LOC107553490,LOC107698357,LOC107719095 non-coding upstream 33665 18156801 ~ 18157647 (-)
G139653 NA non-coding upstream 42990 18166126 ~ 18166731 (-)
G139681 NA non-coding upstream 132722 18255858 ~ 18313605 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding upstream 216138 18339274 ~ 18339510 (-)
G139701 NA non-coding upstream 216893 18340029 ~ 18340244 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 291913 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 687991 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1653898 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1749315 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 2011387 16017318 ~ 16104727 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 220327 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 282891 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1131598 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1138330 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 1175098 19298234 ~ 19303968 (-)

Expression


Co-expression Network