hlx1 (hlx,hlx1,LOC107704027,LOC107567024,LOC107739182,LOC107728099)


Basic Information

Item Value
gene id hlx1
gene name hlx,hlx1,LOC107704027,LOC107567024,LOC107739182,LOC107728099
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24829849 ~ 24832990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218598.1
GGTCCTCCGCTGCGTCCTAAAATACTGAAGCATCTTCTATTTTTGGCCCGAATCTAGCAGGAATATCCGCTCGTTTAGCCCGAATCAGAGCTCATCAAAAACAGGATGACCTGCATCGAGAAACTCCCGTTTCCTCTGTTTCATCCCAGAGCATCTCAGCGGCCGCTGGGCTCTCTTATCAAGAGTCTGCATGCGTTAGAAAACGAGAAAAAGGATCAGGACGCGTGAAAAATATcgctttatacacacacacacacgcgcgcgcgcgcgcgcatcAGACGCGTAATCTAAAATTAATGCATTcgcaataaaaaacataatagctCAACGTTTAGTCAGTTTATATCCATGTTCATCAGCtaaataatgtgaaattaaaacgagctgatttaattgaaaatggAGGCCAGTGGTGGAAATGTGTAGCGTTGTGTCGTTTAATAAACCTGGTGATTTTTAAGAGTCGCGATGGAAGTGCTCGTCGTGTTTGGGGCGTGTTGGACCGTTCTGTCGACTTCCATTGGCTCACAGAGAGCCAATCAATAACGGAACTCCTGCTTAGAGCTTTTCGGACTCCTGTCTGGAGTTTCATACTTGAGGAGAAACGCGAGAGAGGCCGACTCTTACAGCCGAGCGTCGCGTTACACGCAGTTGCGCGCGGTTCCCTCGTCAAGAAGTTGTGGGCTTCTCCTGCCAGGATGTACACGGCGGGACTCAACCCGTTTTACGCGTCGAACTTCAGCCTCTGGACCGCGTACTGCTCGGGCGGCTTCGGGCTGGACAGCGTGAAGAAGCCCTCGTTCTGCATCGCCGACATTCTGCACGTCGGGGACGGGGACATCCCCGGCTCGTCCTCGCTCGCGGCGCACGTCGGGGCCCGCGCGCAGCTTCACTCGCCGGGATCCCCGTTGCGCCCGTCGCCGGTCACCCCGAGCGCGTACCACAGGCACGGAATACACTTGACCTCCAGAGCCGCGATCGGCGCGCAGCCCGCGCCCCCGCCGTCCAGCAAAGACCTCAAGTTCGGGATCGATCGGATATTATCCACAGACTTCGAGCCGAAGGGGAAGGAGTCGCTGTCGCTGAGAGATCTCACGTCGATTGTTAGTCCGAATCGGCAGGCAGCAGTCCATGTGTCTGCAAGCCCGTACTTCGCGTCCATAGACCCGACCATGAGCGAAACCTCCTCCATGATGGGTTCAATAAGCAATGCCGCGAGACAATCAGGGCAACACCAGTTTCAAGACACCTTCCCAGggCCCTACGCGGTGCTTTCCAAAGACACGATGCCGCAGACGTACAAGAGGAAGAGGTCGTGGTCCAGAGCCGTGTTCTCCAACCTCCAGCGGAAAGGCCTCGAGAAGCGCTTCGAAATCCAGAAGTACGTCACGAAGCCGGACAGAAAACAGCTGGCTGCGATGCTGGGCCTCACCGACGCGCAGGTCAAAGTTTGGTTCCAGAACCGGAGGATGAAGTGGCGGCATTCCAAAGAAGCGCAGGCGCAGAAAGACAAGGAAAAAGAGCAGCCGGATAAATCCGCGACCGACACCGAGCCCAAGGAGCGCGACGACTCCGAGTGCGAGAGCGAACCGAGCGAGTCCGAATTCGAGGACGGGGCGGAGGACAAAAGCGACGCGGACGTTTCCGACCCGAGCAAAGCCGGTGTGATTATTCCCGGCCACGACGCGTCCGGCACGAACTCCACGACAGAACCGAGCCCGGGCGCGCTGCAGACGCCGCCGTGAGGATCTTACCGGGGCGGGCGCGCGCGCGAGCGAGGAGCAAAAACACCGGAGGCCCGCCTTGAATCGATCTGGGAAGTGAACGGTCGTGAATTAAGACGTTGATAAACTtgattgtattatattttgtctGTAAGTATTTgcactgaaaatgtaaataaacgtTTGTTACTAATATTC

Function

symbol description
hlx1 Predicted to enable sequence-specific DNA binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation and sprouting angiogenesis. Predicted to be located in nucleus. Is expressed in several structures, including axis; brain; cardiovascular system; digestive system; and prechordal plate. Orthologous to human HLX (H2.0 like homeobox).
hlx Enables sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; enteric nervous system development; and regulation of T-helper cell differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: H2.0-like homeobox protein isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09339 HLX1; homeobox protein HLX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218598.1 True 1922 mRNA 0.55 5 24829849 24832990

Neighbor

gene id symbol gene type direction distance location
mia3 mia3,LOC107739181,LOC107568205 coding downstream 108743 24699172 ~ 24721106 (-)
brox brox,LOC107710643,LOC107732498,LOC107704042,LOC107568230 coding downstream 138760 24682627 ~ 24691089 (-)
LOC122324924 LOC107704029 coding downstream 147375 24678486 ~ 24682474 (-)
LOC122324925 LOC107559109,LOC107669446,LOC100330838,LOC107704031,LOC107568211,LOC107732492 coding downstream 152225 24674210 ~ 24677624 (-)
disp1 disp1,LOC107732496,LOC107704044,LOC107568221 coding downstream 156787 24620458 ~ 24673062 (-)
naprt naprt,LOC107704039,LOC107669423 coding upstream 19479 24852469 ~ 24861840 (-)
c20h8orf82 LOC107669429,LOC107728113,LOC107704038,LOC107567028,LOC107739166 coding upstream 32469 24865459 ~ 24867178 (-)
tbc1d7 tbc1d7,LOC108443239,LOC108260306 coding upstream 243498 25076488 ~ 25085331 (-)
wu:fi04e12 LOC107739175,LOC107672942,LOC107567016,LOC107661358,LOC107728115 coding upstream 253180 25086170 ~ 25102714 (-)
LOC122325515 LOC107739175,LOC107661358,LOC107728115,LOC107672942,LOC107567016 coding upstream 271248 25104238 ~ 25116679 (-)
G141684 NA non-coding downstream 8423 24821200 ~ 24821426 (-)
G141683 NA non-coding downstream 16693 24812825 ~ 24813156 (-)
G141682 NA non-coding downstream 31216 24794855 ~ 24798633 (-)
G141679 NA non-coding downstream 40945 24788672 ~ 24788904 (-)
G141676 NA non-coding downstream 52986 24776615 ~ 24776863 (-)
G141889 NA non-coding upstream 44758 24877748 ~ 24916483 (-)
G141899 NA non-coding upstream 103681 24936671 ~ 24947770 (-)
G141908 NA non-coding upstream 128264 24961254 ~ 24965553 (-)
G141911 NA non-coding upstream 185704 25018694 ~ 25022931 (-)
G141931 NA non-coding upstream 206702 25039692 ~ 25042258 (-)
G141651 NA other downstream 182428 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 297486 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 312106 24254393 ~ 24517743 (-)
G141502 NA other downstream 823184 24004687 ~ 24006665 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other downstream 1006799 23785752 ~ 23823050 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other upstream 5662 24838652 ~ 24851779 (-)
mettl24 LOC107738893 other upstream 461854 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other upstream 493518 25326508 ~ 25377416 (-)
G142058 NA other upstream 815502 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 914677 25747667 ~ 25754008 (-)

Expression


Co-expression Network