LOC122324297 (LOC107683599)


Basic Information

Item Value
gene id LOC122324297
gene name LOC107683599
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18354170 ~ 18363861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218608.1
gaaaagaaaactaaatcaaaGACACTGAGAAACAAGTCTGGCATCTCTTCATGGTTATTTCCAGAGACTGTAAAGGAGAAGATGTAGTCTGGACGAACCATATCTGCCTTTAGTTCTGAAGAAATATGTTGAAGTGATAGTGACTGACTTAAATCTGTGAGAAACATGGCCAGTCAAGATGCAGGAAAAGTGTTAAAGTACTGCGCAGGAATCATCTTAACTGTCCTGCTGACCCATGACTGCGGTGTGGAAGCACTTGATTTCACTGAAACAAATGTAGATTTAGAGTTGAGACAACTGGATGGTACAACAATAAACGCAGTGACAACAGCGGCAacagtttttacaATGTCAATGACAATAAATGAAGATTTTGACATTAGTCTCAACAACCCAGATGATTTGAAGTACAAATTTTATGCCAGCAAAATTCAGTCAGCAATTGAAGAAAGTTACAAAAATGTGCCTGCCTATATAAAGGGTTCAGTAAGGGTGATTCGTTTCAGGCCTGGTAGTATTATAGCAGACTATCAGTTTGAGTCGACAACCAGCAGTCCCAACAGCCCCGACTTTGCAAACGCAAACAAACTGGTCGCCAGCACTCTCATAAAGCAAGGATTCAGTGTAGCTTCGGATGCTTTTGCTCAAAGTGAACAAAGGCACTTGTCTGCAGAAGAATGGTATCCTCAGCAAAACATGGTGCTGAAATGCGTACGCCCGGATTCTGTTGAGGGTACAATGAGATGGACAGTAAATGGACAAGATCCTACACTAAACCCTGTTAAATACAGCATTTCATCTGACAGCAGCACTCTCACTGTGAATAACGTCAATGAGCTTGACAGAGGTCGATACGTATGTATCATAGACAGGACAATACCTTACATTCAGTGGCAGGATATAGTTATTCAGCTACTTCCCAACATCATAGTGGGTGCAAATGACAGGACGTTCCAGTGTGTTAACCAGAATGTTTTACTGACATGTTGTGAACAAACGAACAGTGTGGAGTGGACCCAAATATCGCCTGATGATGTTGTGACACCTCCAGTGGATGGATGCCTCACATTAAACCATGCGatcaaaaatggaaattgtgGAAGTAAGACCTTTATATGTCAACTCAAGAGCACAGCGCTTCAAAGTTTCAGCTATGgcaaaaaaagtgttactgtaAAAGCAGTGGACAATGTGTTtagctgtaaaaatataatgcttGGAGATGGAATTGAAGGTGCTACTGTGACAGGACCCTGTGAAAAAGGCAAGGAAGGCACCATTACATATAGATGTAGATTAGGTGTATGGGAGCGTCAAGAGACAAACTGCATACTTCAGGTTATCGTAAATCTAGGAAAGCAAGTTCAGGTTTTGCAAGTACAGGACATACCAGTATTTATGGCTGATCTTAGTACAGCTACACAGAATAATACACAAGAGATAACACAGTCTACTGTGACTGTCCAGACCATTGTTGAAATACTTGCAAAGGTTGCTGCTGTTTCACAAAACGTTATCATCAATCTGCCTGTGATGAAGAATTTCCTTAAAACAGTGGATATCCTTGTTTCAACATCTTCCTTTTCCACATGGAAAAAATTGAACAATAACACCAGGGCAGATAACACCAGCACAGTACTTCTGAGCGCTATTGAGAATATTAGTGCCCGTCTTACAGATGCTAATTTTACGATTAATGAAGCATATATTGATTTAAGTAGAATTGTTTCAACCAGCTCCTCATATATTGCAATATCAAGCCTGCCACACTCCAATACTGAGATTACAATACCACAGATTCCTGCATCAACTCCTATAACCATTATAGTCTTCACAACTCTTGACAATGTCCTACCTACTCGAGAGACCAGTAAAAAAGGCATTATCAATCCAGATGTGCGCATCAATGGAGATGTGGTTGTAGTAAAGGTTGACAACAAAACGATTAACAACATATCTTTTGCGTTTGACATTACTAATCAGACTTTGAAAAATCCTCAGTGTGTCTTTTGGAACTTTATTCTTGATGCATGGGATTCCACTGGATGTGAAGTAAAGCACTTTATAAGTGGAGGGATTGAAACTGGCAGTGTTACATGTGAATGCAACCATACAACCTCATTTTCAATCCTAATGTCACCGTTTGCCATTGATCACCAAGTCTTAGCATATATAACTTACATTGGCGTAGCTATTTCGATGGCCAGCCTGATCATATGCCTGACTATTGAGACCATTGTGTGGAAGTCAATGACAAGAAATGACACATCCTACATGCGACATGTCTCCATAGTCAACATTGCTGTGTCTCTGCTGATCGCAAATATCTGTTTTATCATTGGAGCTGCAGTCGCAGAAAGTGAGCAGCCGACCTCAGCAGGACGCTGTAGTCCAGTGGTTTTcttcatgcaatttttttaccTGGCTCTTTTCTTCTGGATCTTACTGTCAGCACTGTTGCTCTTTTACCGTACAGTCATGGTCTTGTCTCAAATGTCAAGAGCTAAGATGATGGTCATTGCCTTCACAGTCGGTTATGGTGCACCTTTGCTCATAGCCATCATTACTGTTGCATCAACAGCTGGACCTCAAAATTATGTTACCAAAAAGGATGCATGCTGGCTGAACTGGAACGAATCAAAGGCTCTGCTGGCATTTGTGATTCCAGCTCTCACTATTGTAGCCATAAACCTTGTGGTTTTGATTGTGGTTCTGTACAAGATGTTGAGAAGAGGAGTTGGTGCCACAACTCAACCAGATGAGAAGCATGCCCTGGTGGTTATTGCCAGATGTGTGGCCATTTTGACTCCTATCTTTGGTCTAACATGGGGATTTGGAATTGGTACCACGGTGTCACAGGAATTAGGTGTTCATGTGGTTTTTGCACTCCTTAATTCACTGCAGGGATTCTTTATTTTGGTGTTTGGAACGCTTTTAGACAGCAAGATCCGTGAGGCTCTGGCAGGAAGACTGTCACTAAGGAACCTTACCAGCTCTAACCGTACCAGGAATACTAATGTAGGACCATCATCTTCAAGCGGACAgaatttctttttaagaaatataaATGAGTGCAACTCGTCTAGAGCCAGCATTTTCACAACTACATCTTCAAACAGCTCCTATTCCTCAGATACTTTTATGAACGCTTGATCAGCTACTTCATTAACGAAAATCTACCTTATCAAATTGTAACCAGATTTGCTttctatttgttatttttatataacgctgttctgttctgtctgatttatatacaaaataacaaataaaaaatatttcattgtttcactGATAA

Function

NR:

description
PREDICTED: adhesion G protein-coupled receptor F5-like

GO: NA

KEGG:

id description
K08453 ADGRF1, GPR110; adhesion G-protein coupled receptor F1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218608.1 True 3298 mRNA 0.40 18 18354170 18363861

Neighbor

gene id symbol gene type direction distance location
pla2g7 pla2g7,LOC107698350,LOC107732404,LOC107553483,LOC107696191,LOC107601536 coding downstream 23118 18325927 ~ 18331052 (-)
fzd3a LOC107732395,LOC107599066,LOC107553488,LOC107719091 coding downstream 123115 18214570 ~ 18231055 (-)
lft1 LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102 coding downstream 190845 18161260 ~ 18163325 (-)
kif26bb LOC107732424,LOC107553492,LOC107698359,LOC107719102,LOC107696093,LOC107577345 coding downstream 202497 18134188 ~ 18151673 (-)
cnstb LOC107732406,LOC107698361,LOC107719106,LOC107696101,LOC107553493 coding downstream 220942 18123631 ~ 18133228 (-)
adgrf6 LOC107683600 coding upstream 2906 18366767 ~ 18401190 (-)
LOC122325497 adgrf6,LOC107683600 coding upstream 37305 18401166 ~ 18405819 (-)
LOC122325498 adgrf6,LOC107683600 coding upstream 41942 18405803 ~ 18409109 (-)
LOC122325499 LOC107683600,LOC107601464,LOC107578785 coding upstream 45297 18409158 ~ 18416776 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding upstream 55930 18419791 ~ 18431680 (-)
G139704 NA non-coding downstream 11840 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 12987 18340729 ~ 18341183 (-)
G139701 NA non-coding downstream 13926 18340029 ~ 18340244 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding downstream 14660 18339274 ~ 18339510 (-)
G139681 NA non-coding downstream 40565 18255858 ~ 18313605 (-)
G139708 adgrf6,LOC107683600 non-coding upstream 41943 18405804 ~ 18411854 (-)
LOC122324299 NA non-coding upstream 86083 18449944 ~ 18452132 (-)
G139790 NA non-coding upstream 234833 18598694 ~ 18598912 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding upstream 263446 18627307 ~ 18634666 (-)
G139801 NA non-coding upstream 305577 18669438 ~ 18670933 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 4048 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 529969 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 926047 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1891954 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1987371 16347201 ~ 16366799 (-)
G139706 LOC107683600,LOC107601464 other upstream 42166 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 890873 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 897605 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 934373 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 1237671 19601532 ~ 19615202 (-)

Expression


Co-expression Network