LOC122324298 (LOC107698314,LOC107553424,LOC107683599)


Basic Information

Item Value
gene id LOC122324298
gene name LOC107698314,LOC107553424,LOC107683599
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18419791 ~ 18431680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218609.1
TCAATAAACAAAGGGTGATagctaaatgacattttagacaTGACAATATTGAAATTTCTGCAAAATTTGGAAAATAATTCTAAACGAAGCCGAACTGCTGTGCTTTACACAGCAACacatgaagatgtttttttttctgaatgaataaatCTGTGATTTTGAGAGTCATGAACTTACTACGTTAAAGAATCTAAAGAATGCACTTAGAAATCCCTTTTCATTTAGGAATATTATCCCTAATTATATTTTCTCTAAAGTTGGTGGCCTGAATTTTCTCctgttttgtaattataatgcCTTAAAGGTCTCTAGCAAGCTGTCTGATTTCCATAAGCAGATACCTAGTATGAAATGTGTTGTTCACactttttagtgtttatttagtgtttatttcatttttctgacatttcatatttctataGTTATGTAATTACAACATTAATTTCATAGACATAACTTTATTCACGGAGCATAAATATATAGTTCaatcatgaaaaaatataaatatatagttcaaTCACGGGTTGATATATTCACCTGTTTGCAAAAAAGGCTGCTGACTTTAAAATGTAGATGACACTTCTTGTATGGAAAAACGCTACtcaaaacaactgaaacaattTGTTTCAAACAATAGGGTTGCTCTACAAATAACCCTGACTCATCGGTTTGACTGAATGAGCTGTATTTTCCatcaatgctttattttgacaCAGAATATCTCTTTTTATTCATGGTCTCTtaacataaatatgtaatttgttaTACTTATTGCATTTATAGAGCAACCTTTAAACAAGCTGGCAATACAACAGAAGAAAATCCcttaatgcaatatataaacgtatatattgtgtgtgtgttagatatAAATAGTGTTCACTATACTTACAGTAATCTGATGAATCATGTGTAACAAATCTTAAACACTCACAtccacatttcaaataaaagctgatgGGTGTGTTCATAAGGTTCATGACATCGATAATTACGTGTTATAATACTCTGCCCATGAAAGTAATGCacgttatatataaaaataaaacggcaagattactttaaacattaaatcttaacttacattttagcatttttacatatcaaatgtaataatatatgatCTGACAATGTAACCcactttatttctgttaaaatacGTCCCTTGTCTGTTTACACAAAAGAACATAGTAGAATCAAACTTGTCTAGCAGGTGATATACACAGACAATCAGTGACCTGCTTACAGGCACATTAATTCCGGTAGAGGTGGATCATCTGAGAAAGAAAGTCATCTCAGAACCTAACTCTCAGGCTCTCTAAATGGTCGTTTCCACAGGCAGAGTAAGAgtgtttattcttttaaatgtgtaacTACTGTAAACGGCCTTTTTGAAGTAGATTCATAGAAAGGCATTCTTACtttgatatatatgtgtgtgtgtgtgtgtgtgtgtaattttgtatttttatgcatgtataaatttaATCACATCATTGTTCTGTGATTCTATTTGGATTTGCTATCTTACAGATATAAGCTGTCTGGATGAGTCATATAATTGCCATTTGTTGAAGAAATAGATTGAAACGATTTTGACTGACAGACATCAGTGAGAAACATGGGAGGGCAAgGACGAATATCGAAGTACTTCATAGGAATCATCGTGGCTGTCTTGCTGACCCGTGAATGTGAAATGCAGAACGCATATGAAAACACGTATTCTGATTTCCCAGAAACAAGTATTGGGTTACAGTTTAGCTACACAGATGGGCCACAGCATCATAGAAGACAGAGAAGCTCAGATCAATTGGAATATTTTGCAGTTGTGGAAATGAATGTATCCCAAGCTGTGGTGATTGAACAGATCAAAAAATCATTGGCCTATGCCATGTTTCCTTTTCAAATGGACAACAATACTGAAATTATTTTTGCCAACATTACAACGGTGTGCCAATCAAATGTGTCTGAATACCAGTGCATATGTGAAGATGGTTATGCGTGGTCGTACAACAACTGCCAGACATATGAGGCCTGTGGCGACATCGGTTTTGGCTCATGTGGATGTATCAGTCGTGTTCCCAGTGATGGAGAGATGTGTGTGCTGGAGAGCGTACCATCACCAAAAGCACCATTTACAGAATCCCCAACACCATCAGAACCAACAGAATCACTATCAACCCCAACACCATTAATATCAACAACATTATCAAGACAATCAATTACTCCACCACCAATAGAATCCCTATCAACAGCAACAATGTCTACACTATCAACAGAGTCACCATCATCAACAGAATCAACATCTACATCATCGATATCACTGCTAACACCATCAACAGAATTAACATCACCATCGACAACAACACCATCACCAACAACAGCGATGCCGTCACCAGAATCACCATCAGCAACAGCGACACAATCAACATCAATGCTAACACCATTCACAGAATCATCTTCAACAGCAACACCTTCACCATCAACGCCACCAACAGAGTCACAATCAACATCAGTGCTAACACCCTCAACAGAATCGCCATCATCAGTAGCAACACAATCAACATATATGACATCCAAGCCACCAACACCATCCAAATCAACACTATCGACACCTGCGCCATCAACACAACCAACAACAATGAAAACGATAGTTATTGGAATGTCAGTGAAAATATCTCAGACTTTTGACCCCAGCCTTTCTGACAATAATAGCGTGACCTACAAAGATTTATCTAGACGAATTGAGTCAGTGattGACACAATTTATTCTAATAAGCTAAATGGCTACAAGGTTGGTTCTACAAAAGTCACTGGCTTCAGGCCTGGTAGTGTTATAGCAGACTACACAATAAATGCAACATCCAACAGCCTTGACTTTGGAGCAGCCAACGCAGAGGTTTCTGACTCTTTAAGTAAACAAGGATTAATATTAGCAGAAGATGCTTTTACTCTAAGTGATCAAATAGTTTTCACATCAGATCAGTTATATCCGCTGCAAAAGGTGGAGCTGAACTGTGCACAGCCGGGGTTTGCAATGGGCCAAATAAAATGGACGGTGGATAACAAAGATCCAGCACTAGACAACACAAGATACTTCATTTCAAACGACAACAGTACTCTCACTGTGAAAAATGCTACTGAAAGTGACAGTGGTCGATACTCATGCATTATACAAGGCAATATACCGTACGTTCAATGGCAAAacattactattaaaaaaagccCCAGTATTAATGTGGGTGAAAAGGAACGCTATTTTTTCTGTGATGGCAGCCGTTTCCAACTGATATGTTCTGTTGATGTTGGCTACAATATTGAGTGGGTCCTGGGTGAAAACGTATTAACGTCAGGAAATGGCACCATCACATACAACTAtacaatgcaaaatgtaaattgtaCAGAGAAAATCTTTACATGTCGTCTCAGGGATCTGCCACAGCTGAAGAACTATGGATATAGCCAGAGCAGTGTTAGAGTAAGAACAATCGCAGCAGGTGATGCTAATGTACTTGACGTTATCCACAAACTTACAAGTAAAGTTGAGTTCTTGACAGGGGAGGAGATTCCAGTGTTCATGGCTAATCTCAGTTCTTCCACAGAAcagtatgaaaataatatatccCATTCCTCTGCTACTGTTCAAGCAATTGTGGATATACTCTCTAAAATTGCTGATTTGTCAGAATCAGTTGTTATCAATGAACCAGTAATGAGGCATTTCCTAAAAACAGTGGATATTATTATATCAGATAACTTCATTGACACATGGAACAAACTGACAACAAATAACACCAGCATTAAACTTCTGAGTGCTATTGAGAATATAAGTGGCCATCTCACAGATGAGTTTGTGATTAATGAAAAATCCATTCAGCTGAATAGAACTAAAGTTCCAAactcattcattttaacatcaGCACTGCCAAACTCAACTACAGAGATTGTGATACCACAGGTTCCTCAAGCGACTATCATAACCATCATAATTTTCACAACTCTTGGCAATGTCCTACCTACTCGTGTTTCTAATGACAGCAAGAAATCAGATGTGCACATCAATGGAGATGTGGTTGTTGTTAAGGTTAACGAAACGCTTAACaacatttcttttacatttgacATTACTGATCAGTCTTTGGGAAAGCCTCAGTGTGTCTTTTGGAACTTTAGTCTCAACACATGGGATTCCACTGGATGTGAAGTAAAGCAGAACAGTACTGGAAACATTACATGTGAATGCAACCACACAACTTCATTTTCAATCTTAATGTCACCATTTTCTATTGATCCTGGTAATCAAATACCCTTAAGCTATATAACTCGCATTGGTCTAGCTATTTCGATGGCCAGTTTGATTATATGCCTGATTATTGAGGCTACCGTATGGAAGTCAGTAAGAAGAAATGACACATCCTACATGCGACATGTCTCCATAGTCAACATTGCTGTATCTCTGCTGATTGCAAACATCTGTTTTATCATTGGAGATGCATTTGCAGACGAAGAGCAGCCATTCAAAGAAGATCGATGCAATGCATTGAGTTTTTTCATGCACTACTTTTACCTGGCTCTTTTCTTCTGGATGTAACTGTCAGCACTGTTGCTCTTTTACCGTACAGTCATGGTCTTGTCTCAAATGTCAAGAGCTAAGATGATGGTCATTGCCTTCACAGTCGGTTATGGTGCACCTTTGCTCATAGCGGTCATTACTGTTGCATCAACAGCTGGACATCAAAAGTATATTACCAAAAATGATGTATGCTGGCTGAACTGGAACGAATCAAATGCTCTGCTGGCATTTGTGATTCCAGCTCTCACTATTGTAGCCATAAACCTTGTGGTTTTGGTTGTGGTTCTGTACAAGATGTTGAGAAGAGGAGTTGGTGCCACAACTCAACCAGATGAGAAGCATGCCCTGGTGGTTATTGCCAGATGTGTGGCCATTTTGACTCCTATCTTTGGTCTAACATGGGGATTTGGAATTGGAACCATGGTGTCACAGAAATTAGGCATTCATGTGGTGTTTGCACTCCTCAACTCACTGCAGGGATTCTTTATTTTGGTGTTTGGAACGCTTTTAGACAGCAAGGTCCGTGAGTCATTATCAGGAACGCTGTTGCTACAGAAACTCACTTCTAGCCTCACCAAT

Function

NR:

description
PREDICTED: adhesion G-protein coupled receptor F1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218609.1 True 5152 mRNA 0.38 16 18419791 18431680

Neighbor

gene id symbol gene type direction distance location
LOC122325499 LOC107683600,LOC107601464,LOC107578785 coding downstream 3015 18409158 ~ 18416776 (-)
LOC122325498 adgrf6,LOC107683600 coding downstream 10682 18405803 ~ 18409109 (-)
LOC122325497 adgrf6,LOC107683600 coding downstream 13972 18401166 ~ 18405819 (-)
adgrf6 LOC107683600 coding downstream 18601 18366767 ~ 18401190 (-)
LOC122324297 LOC107683599 coding downstream 55930 18354170 ~ 18363861 (-)
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding upstream 153 18431833 ~ 18447372 (-)
tnfrsf21 tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348 coding upstream 22028 18453708 ~ 18473259 (-)
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding upstream 96758 18528438 ~ 18555294 (-)
LOC122325333 spats1,LOC107553422,LOC107736684,LOC107601458 coding upstream 172971 18604651 ~ 18607543 (-)
si:dkey-1j5.4 si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529 coding upstream 229829 18661509 ~ 18669079 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 7937 18405804 ~ 18411854 (-)
G139704 NA non-coding downstream 77461 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 78608 18340729 ~ 18341183 (-)
G139701 NA non-coding downstream 79547 18340029 ~ 18340244 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding downstream 80281 18339274 ~ 18339510 (-)
LOC122324299 NA non-coding upstream 18264 18449944 ~ 18452132 (-)
G139790 NA non-coding upstream 167014 18598694 ~ 18598912 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding upstream 195627 18627307 ~ 18634666 (-)
G139801 NA non-coding upstream 237758 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 393200 18824880 ~ 18829799 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 69669 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 595590 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 991668 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1957575 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 2052992 16347201 ~ 16366799 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 823054 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 829786 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 866554 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 1169852 19601532 ~ 19615202 (-)
G140227 cad other upstream 1625944 20057624 ~ 20059603 (-)

Expression


Co-expression Network